Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SKA1Q96BD8 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.89■□□□□ 0.61
SKA1Q96BD8 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
SKA1Q96BD8 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SKA1Q96BD8 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SKA1Q96BD8 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.89■□□□□ 0.61
SKA1Q96BD8 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SKA1Q96BD8 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SKA1Q96BD8 AC009947.2-201ENST00000444014 672 ntBASIC18.89■□□□□ 0.61
SKA1Q96BD8 FAM86EP-206ENST00000510506 987 ntBASIC18.89■□□□□ 0.61
SKA1Q96BD8 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.89■□□□□ 0.61
SKA1Q96BD8 AL441883.1-201ENST00000566170 1045 ntBASIC18.89■□□□□ 0.61
SKA1Q96BD8 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SKA1Q96BD8 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.89■□□□□ 0.61
SKA1Q96BD8 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SKA1Q96BD8 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
SKA1Q96BD8 KRT8P11-201ENST00000409686 1436 ntBASIC18.89■□□□□ 0.61
SKA1Q96BD8 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SKA1Q96BD8 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SKA1Q96BD8 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SKA1Q96BD8 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SKA1Q96BD8 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 KRT8P45-201ENST00000414328 1447 ntBASIC18.88■□□□□ 0.61
SKA1Q96BD8 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SKA1Q96BD8 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SKA1Q96BD8 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA1Q96BD8 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.87■□□□□ 0.61
SKA1Q96BD8 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SKA1Q96BD8 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SKA1Q96BD8 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SKA1Q96BD8 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.87■□□□□ 0.61
SKA1Q96BD8 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA1Q96BD8 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA1Q96BD8 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.87■□□□□ 0.61
SKA1Q96BD8 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA1Q96BD8 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA1Q96BD8 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SKA1Q96BD8 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA1Q96BD8 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA1Q96BD8 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SKA1Q96BD8 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA1Q96BD8 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.87■□□□□ 0.61
SKA1Q96BD8 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.87■□□□□ 0.61
SKA1Q96BD8 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.87■□□□□ 0.61
SKA1Q96BD8 KRT18P56-201ENST00000507275 550 ntBASIC18.87■□□□□ 0.61
SKA1Q96BD8 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.87■□□□□ 0.61
SKA1Q96BD8 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.87■□□□□ 0.61
SKA1Q96BD8 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SKA1Q96BD8 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms