Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
CLRN3Q8NCR9 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CLRN3Q8NCR9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CLRN3Q8NCR9 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
CLRN3Q8NCR9 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
CLRN3Q8NCR9 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CLRN3Q8NCR9 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
CLRN3Q8NCR9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
CLRN3Q8NCR9 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 PHGDH-210ENST00000641115 1638 ntBASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 DUX4L19-201ENST00000557448 1267 ntBASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 AC131212.1-201ENST00000613771 668 ntBASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CLRN3Q8NCR9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 AGGF1P2-201ENST00000426656 2106 ntBASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 AC022188.1-201ENST00000620960 1664 ntBASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN3Q8NCR9 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 LYSMD4-203ENST00000378904 2122 ntBASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms