Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
USP48Q86UV5 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
USP48Q86UV5 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
USP48Q86UV5 AL391807.1-203ENST00000604392 2365 ntBASIC22.53■■□□□ 1.2
USP48Q86UV5 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP48Q86UV5 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP48Q86UV5 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
USP48Q86UV5 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
USP48Q86UV5 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP48Q86UV5 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC22.53■■□□□ 1.2
USP48Q86UV5 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC22.53■■□□□ 1.2
USP48Q86UV5 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC22.53■■□□□ 1.2
USP48Q86UV5 AL136038.4-201ENST00000603606 1261 ntBASIC22.53■■□□□ 1.2
USP48Q86UV5 AL121912.1-201ENST00000603683 238 ntBASIC22.53■■□□□ 1.2
USP48Q86UV5 AC120114.3-201ENST00000611923 658 ntBASIC22.53■■□□□ 1.2
USP48Q86UV5 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
USP48Q86UV5 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC22.53■■□□□ 1.2
USP48Q86UV5 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
USP48Q86UV5 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP48Q86UV5 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP48Q86UV5 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
USP48Q86UV5 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC22.52■■□□□ 1.2
USP48Q86UV5 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC22.52■■□□□ 1.2
USP48Q86UV5 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 EML3-217ENST00000531557 2509 ntTSL 5 BASIC22.52■■□□□ 1.2
USP48Q86UV5 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC22.52■■□□□ 1.2
USP48Q86UV5 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
USP48Q86UV5 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 AL023284.2-201ENST00000405850 579 ntBASIC22.52■■□□□ 1.2
USP48Q86UV5 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC22.52■■□□□ 1.2
USP48Q86UV5 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC22.52■■□□□ 1.2
USP48Q86UV5 GRAMD4P1-201ENST00000435181 1110 ntBASIC22.52■■□□□ 1.2
USP48Q86UV5 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC22.52■■□□□ 1.2
USP48Q86UV5 KRT16P4-201ENST00000453883 522 ntBASIC22.52■■□□□ 1.2
USP48Q86UV5 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC22.52■■□□□ 1.2
USP48Q86UV5 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC22.52■■□□□ 1.2
USP48Q86UV5 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
USP48Q86UV5 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
USP48Q86UV5 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC22.52■■□□□ 1.2
USP48Q86UV5 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 HLA-A-201ENST00000376802 1334 ntBASIC22.52■■□□□ 1.2
USP48Q86UV5 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP48Q86UV5 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC22.52■■□□□ 1.2
USP48Q86UV5 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC22.52■■□□□ 1.19
USP48Q86UV5 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC22.51■■□□□ 1.19
USP48Q86UV5 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC22.51■■□□□ 1.19
USP48Q86UV5 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 DFFB-203ENST00000341385 572 ntTSL 5 BASIC22.51■■□□□ 1.19
USP48Q86UV5 TEX30-205ENST00000376029 959 ntTSL 2 BASIC22.51■■□□□ 1.19
USP48Q86UV5 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC22.51■■□□□ 1.19
USP48Q86UV5 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC22.51■■□□□ 1.19
USP48Q86UV5 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC22.51■■□□□ 1.19
USP48Q86UV5 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP48Q86UV5 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC22.5■■□□□ 1.19
USP48Q86UV5 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
USP48Q86UV5 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC22.5■■□□□ 1.19
USP48Q86UV5 AC104581.1-202ENST00000635932 2618 ntBASIC22.5■■□□□ 1.19
USP48Q86UV5 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP48Q86UV5 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP48Q86UV5 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP48Q86UV5 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP48Q86UV5 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC22.5■■□□□ 1.19
USP48Q86UV5 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC22.5■■□□□ 1.19
USP48Q86UV5 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
USP48Q86UV5 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC22.5■■□□□ 1.19
USP48Q86UV5 AC138894.3-201ENST00000603787 634 ntBASIC22.5■■□□□ 1.19
USP48Q86UV5 BX640515.1-201ENST00000617215 977 ntBASIC22.5■■□□□ 1.19
USP48Q86UV5 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP48Q86UV5 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC22.5■■□□□ 1.19
USP48Q86UV5 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP48Q86UV5 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
USP48Q86UV5 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
USP48Q86UV5 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC22.5■■□□□ 1.19
USP48Q86UV5 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC22.5■■□□□ 1.19
USP48Q86UV5 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
USP48Q86UV5 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms