Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.86■□□□□ 0.29
MSX1P28360 AC024243.1-201ENST00000609234 778 ntBASIC16.86■□□□□ 0.29
MSX1P28360 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.86■□□□□ 0.29
MSX1P28360 AC116407.4-201ENST00000623319 1061 ntBASIC16.86■□□□□ 0.29
MSX1P28360 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.86■□□□□ 0.29
MSX1P28360 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.86■□□□□ 0.29
MSX1P28360 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
MSX1P28360 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.85■□□□□ 0.29
MSX1P28360 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
MSX1P28360 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.85■□□□□ 0.29
MSX1P28360 SEC1P-202ENST00000473944 940 ntBASIC16.85■□□□□ 0.29
MSX1P28360 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.85■□□□□ 0.29
MSX1P28360 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.85■□□□□ 0.29
MSX1P28360 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.85■□□□□ 0.29
MSX1P28360 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.85■□□□□ 0.29
MSX1P28360 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 AL163051.1-201ENST00000569214 1512 ntBASIC16.85■□□□□ 0.29
MSX1P28360 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.85■□□□□ 0.29
MSX1P28360 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
MSX1P28360 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
MSX1P28360 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX1P28360 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 AC073592.3-201ENST00000625118 1834 ntBASIC16.84■□□□□ 0.29
MSX1P28360 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
MSX1P28360 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.84■□□□□ 0.29
MSX1P28360 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.84■□□□□ 0.29
MSX1P28360 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
MSX1P28360 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 TPM4P1-201ENST00000436100 807 ntBASIC16.84■□□□□ 0.29
MSX1P28360 DUSP5P1-201ENST00000441325 1139 ntBASIC16.84■□□□□ 0.29
MSX1P28360 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.84■□□□□ 0.29
MSX1P28360 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.84■□□□□ 0.29
MSX1P28360 AC010240.3-201ENST00000607688 395 ntBASIC16.84■□□□□ 0.29
MSX1P28360 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 AC069148.1-201ENST00000608741 768 ntBASIC16.84■□□□□ 0.29
MSX1P28360 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
MSX1P28360 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.84■□□□□ 0.29
MSX1P28360 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.84■□□□□ 0.29
MSX1P28360 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.84■□□□□ 0.29
MSX1P28360 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX1P28360 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.84■□□□□ 0.29
MSX1P28360 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
MSX1P28360 AC004408.2-201ENST00000623613 2777 ntBASIC16.83■□□□□ 0.29
MSX1P28360 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSX1P28360 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.83■□□□□ 0.28
MSX1P28360 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX1P28360 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX1P28360 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSX1P28360 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
MSX1P28360 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSX1P28360 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSX1P28360 AL450487.1-201ENST00000426799 995 ntBASIC16.83■□□□□ 0.28
MSX1P28360 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.83■□□□□ 0.28
MSX1P28360 HCG4P8-203ENST00000443049 980 ntBASIC16.83■□□□□ 0.28
MSX1P28360 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.83■□□□□ 0.28
MSX1P28360 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.83■□□□□ 0.28
MSX1P28360 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSX1P28360 MIR3917-201ENST00000580971 93 ntBASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms