Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 LINC01238-205ENST00000567549 1107 ntBASIC18.38■□□□□ 0.53
XRCC1P18887 NEK4P2-201ENST00000580004 1012 ntBASIC18.38■□□□□ 0.53
XRCC1P18887 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.38■□□□□ 0.53
XRCC1P18887 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC1P18887 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC1P18887 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
XRCC1P18887 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC1P18887 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC1P18887 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.38■□□□□ 0.53
XRCC1P18887 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.38■□□□□ 0.53
XRCC1P18887 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC1P18887 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC1P18887 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC1P18887 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC1P18887 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC1P18887 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC1P18887 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC1P18887 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.37■□□□□ 0.53
XRCC1P18887 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
XRCC1P18887 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC1P18887 AP000523.1-201ENST00000398242 1049 ntBASIC18.37■□□□□ 0.53
XRCC1P18887 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.37■□□□□ 0.53
XRCC1P18887 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.37■□□□□ 0.53
XRCC1P18887 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.37■□□□□ 0.53
XRCC1P18887 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.37■□□□□ 0.53
XRCC1P18887 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
XRCC1P18887 WWOX-216ENST00000569818 525 ntBASIC18.37■□□□□ 0.53
XRCC1P18887 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.37■□□□□ 0.53
XRCC1P18887 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.37■□□□□ 0.53
XRCC1P18887 AC140113.3-201ENST00000605663 199 ntBASIC18.37■□□□□ 0.53
XRCC1P18887 AC011558.1-201ENST00000623459 338 ntBASIC18.37■□□□□ 0.53
XRCC1P18887 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC1P18887 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
XRCC1P18887 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC1P18887 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC1P18887 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.37■□□□□ 0.53
XRCC1P18887 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC1P18887 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.37■□□□□ 0.53
XRCC1P18887 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.37■□□□□ 0.53
XRCC1P18887 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
XRCC1P18887 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.37■□□□□ 0.53
XRCC1P18887 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
XRCC1P18887 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
XRCC1P18887 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
XRCC1P18887 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 ARMC10P1-201ENST00000313754 855 ntBASIC18.36■□□□□ 0.53
XRCC1P18887 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.36■□□□□ 0.53
XRCC1P18887 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.36■□□□□ 0.53
XRCC1P18887 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.36■□□□□ 0.53
XRCC1P18887 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.36■□□□□ 0.53
XRCC1P18887 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
XRCC1P18887 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.36■□□□□ 0.53
XRCC1P18887 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.36■□□□□ 0.53
XRCC1P18887 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.36■□□□□ 0.53
XRCC1P18887 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.36■□□□□ 0.53
XRCC1P18887 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.36■□□□□ 0.53
XRCC1P18887 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 CR769767.2-201ENST00000622735 460 ntBASIC18.36■□□□□ 0.53
XRCC1P18887 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.36■□□□□ 0.53
XRCC1P18887 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
XRCC1P18887 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
XRCC1P18887 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.35■□□□□ 0.53
XRCC1P18887 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.35■□□□□ 0.53
XRCC1P18887 GPAT2P1-201ENST00000444924 1672 ntBASIC18.35■□□□□ 0.53
XRCC1P18887 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.35■□□□□ 0.53
XRCC1P18887 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.35■□□□□ 0.53
XRCC1P18887 AL023284.2-201ENST00000405850 579 ntBASIC18.35■□□□□ 0.53
XRCC1P18887 FAM8A6P-201ENST00000407496 1135 ntBASIC18.35■□□□□ 0.53
XRCC1P18887 AC022616.7-201ENST00000525383 220 ntBASIC18.35■□□□□ 0.53
XRCC1P18887 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.35■□□□□ 0.53
XRCC1P18887 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.35■□□□□ 0.53
XRCC1P18887 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.35■□□□□ 0.53
XRCC1P18887 NTF6B-201ENST00000591913 560 ntBASIC18.35■□□□□ 0.53
XRCC1P18887 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
XRCC1P18887 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.35■□□□□ 0.53
XRCC1P18887 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms