Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC239859.2-201ENST00000444165 318 ntBASIC27.46■■□□□ 1.99
LRCH3Q96II8 AC103724.3-201ENST00000564481 992 ntBASIC27.46■■□□□ 1.99
LRCH3Q96II8 AL031848.2-201ENST00000607670 837 ntBASIC27.46■■□□□ 1.99
LRCH3Q96II8 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
LRCH3Q96II8 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC27.45■■□□□ 1.99
LRCH3Q96II8 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC27.45■■□□□ 1.98
LRCH3Q96II8 GRAMD4P7-201ENST00000578182 1232 ntBASIC27.45■■□□□ 1.98
LRCH3Q96II8 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC27.45■■□□□ 1.98
LRCH3Q96II8 RALB-208ENST00000631312 311 ntTSL 5 BASIC27.45■■□□□ 1.98
LRCH3Q96II8 SMPD5-203ENST00000639008 1464 ntBASIC27.44■■□□□ 1.98
LRCH3Q96II8 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
LRCH3Q96II8 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
LRCH3Q96II8 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
LRCH3Q96II8 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC27.44■■□□□ 1.98
LRCH3Q96II8 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
LRCH3Q96II8 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC27.43■■□□□ 1.98
LRCH3Q96II8 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
LRCH3Q96II8 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
LRCH3Q96II8 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC27.43■■□□□ 1.98
LRCH3Q96II8 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
LRCH3Q96II8 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
LRCH3Q96II8 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC27.42■■□□□ 1.98
LRCH3Q96II8 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC27.42■■□□□ 1.98
LRCH3Q96II8 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC27.42■■□□□ 1.98
LRCH3Q96II8 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC27.42■■□□□ 1.98
LRCH3Q96II8 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
LRCH3Q96II8 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
LRCH3Q96II8 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
LRCH3Q96II8 AC010864.1-201ENST00000609407 1511 ntBASIC27.41■■□□□ 1.98
LRCH3Q96II8 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
LRCH3Q96II8 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC27.4■■□□□ 1.98
LRCH3Q96II8 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC27.4■■□□□ 1.98
LRCH3Q96II8 RNF146-205ENST00000477776 762 ntTSL 3 BASIC27.39■■□□□ 1.98
LRCH3Q96II8 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC27.39■■□□□ 1.97
LRCH3Q96II8 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC27.38■■□□□ 1.97
LRCH3Q96II8 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC27.38■■□□□ 1.97
LRCH3Q96II8 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC27.37■■□□□ 1.97
LRCH3Q96II8 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
LRCH3Q96II8 AL139246.5-201ENST00000606645 996 ntBASIC27.37■■□□□ 1.97
LRCH3Q96II8 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
LRCH3Q96II8 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC27.36■■□□□ 1.97
LRCH3Q96II8 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC27.36■■□□□ 1.97
LRCH3Q96II8 CREM-229ENST00000474362 1030 ntTSL 2 BASIC27.36■■□□□ 1.97
LRCH3Q96II8 HYI-210ENST00000486909 905 ntTSL 5 BASIC27.36■■□□□ 1.97
LRCH3Q96II8 PEX7-203ENST00000541292 945 ntTSL 5 BASIC27.36■■□□□ 1.97
LRCH3Q96II8 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
LRCH3Q96II8 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
LRCH3Q96II8 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC27.35■■□□□ 1.97
LRCH3Q96II8 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
LRCH3Q96II8 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC27.35■■□□□ 1.97
LRCH3Q96II8 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
LRCH3Q96II8 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC27.34■■□□□ 1.97
LRCH3Q96II8 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC27.34■■□□□ 1.97
LRCH3Q96II8 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
LRCH3Q96II8 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
LRCH3Q96II8 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
LRCH3Q96II8 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
LRCH3Q96II8 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
LRCH3Q96II8 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
LRCH3Q96II8 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
LRCH3Q96II8 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
LRCH3Q96II8 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC27.33■■□□□ 1.97
LRCH3Q96II8 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
LRCH3Q96II8 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
LRCH3Q96II8 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
LRCH3Q96II8 AC127502.1-201ENST00000399971 1502 ntBASIC27.32■■□□□ 1.96
LRCH3Q96II8 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC27.32■■□□□ 1.96
LRCH3Q96II8 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
LRCH3Q96II8 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC27.32■■□□□ 1.96
LRCH3Q96II8 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
LRCH3Q96II8 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
LRCH3Q96II8 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
LRCH3Q96II8 NALT1-201ENST00000429224 738 ntTSL 5 BASIC27.31■■□□□ 1.96
LRCH3Q96II8 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC27.31■■□□□ 1.96
LRCH3Q96II8 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
LRCH3Q96II8 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
LRCH3Q96II8 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
LRCH3Q96II8 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
LRCH3Q96II8 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
LRCH3Q96II8 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC27.29■■□□□ 1.96
LRCH3Q96II8 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
LRCH3Q96II8 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC27.29■■□□□ 1.96
LRCH3Q96II8 RAP2CP1-202ENST00000605179 643 ntBASIC27.29■■□□□ 1.96
LRCH3Q96II8 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
LRCH3Q96II8 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
LRCH3Q96II8 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC27.28■■□□□ 1.96
LRCH3Q96II8 IDNK-201ENST00000376417 511 ntTSL 5 BASIC27.28■■□□□ 1.96
LRCH3Q96II8 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
LRCH3Q96II8 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
LRCH3Q96II8 AC093536.1-201ENST00000569153 554 ntBASIC27.28■■□□□ 1.96
LRCH3Q96II8 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC27.28■■□□□ 1.96
LRCH3Q96II8 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
LRCH3Q96II8 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
LRCH3Q96II8 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC27.27■■□□□ 1.96
LRCH3Q96II8 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC27.27■■□□□ 1.96
LRCH3Q96II8 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.26■■□□□ 1.95
LRCH3Q96II8 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
LRCH3Q96II8 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
LRCH3Q96II8 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC27.26■■□□□ 1.95
LRCH3Q96II8 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms