Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC28.82■■■□□ 2.2
MMP1P03956 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
MMP1P03956 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
MMP1P03956 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
MMP1P03956 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC28.82■■■□□ 2.2
MMP1P03956 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC28.82■■■□□ 2.2
MMP1P03956 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
MMP1P03956 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
MMP1P03956 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
MMP1P03956 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
MMP1P03956 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
MMP1P03956 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC28.79■■■□□ 2.2
MMP1P03956 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
MMP1P03956 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
MMP1P03956 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC28.78■■■□□ 2.2
MMP1P03956 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC28.77■■■□□ 2.2
MMP1P03956 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
MMP1P03956 AC008813.1-201ENST00000536597 885 ntBASIC28.77■■■□□ 2.2
MMP1P03956 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
MMP1P03956 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC28.77■■■□□ 2.2
MMP1P03956 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC28.76■■■□□ 2.19
MMP1P03956 HSD17B1P1-201ENST00000590052 955 ntBASIC28.76■■■□□ 2.19
MMP1P03956 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC28.76■■■□□ 2.19
MMP1P03956 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
MMP1P03956 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
MMP1P03956 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
MMP1P03956 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
MMP1P03956 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
MMP1P03956 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC28.74■■■□□ 2.19
MMP1P03956 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC28.74■■■□□ 2.19
MMP1P03956 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
MMP1P03956 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC28.73■■■□□ 2.19
MMP1P03956 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
MMP1P03956 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
MMP1P03956 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
MMP1P03956 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
MMP1P03956 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
MMP1P03956 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC28.73■■■□□ 2.19
MMP1P03956 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC28.72■■■□□ 2.19
MMP1P03956 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC28.72■■■□□ 2.19
MMP1P03956 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC28.72■■■□□ 2.19
MMP1P03956 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.72■■■□□ 2.19
MMP1P03956 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC28.72■■■□□ 2.19
MMP1P03956 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
MMP1P03956 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
MMP1P03956 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC28.71■■■□□ 2.19
MMP1P03956 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.19
MMP1P03956 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC28.7■■■□□ 2.18
MMP1P03956 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC28.7■■■□□ 2.18
MMP1P03956 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
MMP1P03956 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
MMP1P03956 AC148477.6-201ENST00000623746 465 ntBASIC28.69■■■□□ 2.18
MMP1P03956 AL449106.1-201ENST00000608517 1980 ntBASIC28.69■■■□□ 2.18
MMP1P03956 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
MMP1P03956 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC28.69■■■□□ 2.18
MMP1P03956 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC28.68■■■□□ 2.18
MMP1P03956 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
MMP1P03956 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
MMP1P03956 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.67■■■□□ 2.18
MMP1P03956 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
MMP1P03956 MIR219A2-201ENST00000608502 1504 ntBASIC28.67■■■□□ 2.18
MMP1P03956 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
MMP1P03956 PKM-203ENST00000389093 2279 ntTSL 5 BASIC28.67■■■□□ 2.18
MMP1P03956 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC28.66■■■□□ 2.18
MMP1P03956 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC28.66■■■□□ 2.18
MMP1P03956 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
MMP1P03956 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
MMP1P03956 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
MMP1P03956 CHST11-203ENST00000547956 936 ntTSL 2 BASIC28.65■■■□□ 2.18
MMP1P03956 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC28.65■■■□□ 2.18
MMP1P03956 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
MMP1P03956 WHAMMP3-201ENST00000611636 1609 ntBASIC28.65■■■□□ 2.18
MMP1P03956 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
MMP1P03956 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
MMP1P03956 BRD4-212ENST00000630599 726 ntTSL 2 BASIC28.64■■■□□ 2.18
MMP1P03956 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.17
MMP1P03956 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
MMP1P03956 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC28.63■■■□□ 2.17
MMP1P03956 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
MMP1P03956 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC28.62■■■□□ 2.17
MMP1P03956 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
MMP1P03956 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC28.62■■■□□ 2.17
MMP1P03956 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
MMP1P03956 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
MMP1P03956 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC28.61■■■□□ 2.17
MMP1P03956 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
MMP1P03956 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC28.61■■■□□ 2.17
MMP1P03956 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC28.6■■■□□ 2.17
MMP1P03956 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
MMP1P03956 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
MMP1P03956 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
MMP1P03956 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
MMP1P03956 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC28.59■■■□□ 2.17
MMP1P03956 METRNL-202ENST00000570778 967 ntTSL 5 BASIC28.59■■■□□ 2.17
MMP1P03956 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC28.59■■■□□ 2.17
MMP1P03956 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
MMP1P03956 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
MMP1P03956 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC28.57■■■□□ 2.16
MMP1P03956 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
MMP1P03956 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms