Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 SETD8P1-201ENST00000623146 1180 ntBASIC21.31■■□□□ 1
XRCC3O43542 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
XRCC3O43542 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
XRCC3O43542 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
XRCC3O43542 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.3■■□□□ 1
XRCC3O43542 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
XRCC3O43542 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.3■■□□□ 1
XRCC3O43542 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.3■■□□□ 1
XRCC3O43542 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
XRCC3O43542 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
XRCC3O43542 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC3O43542 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC3O43542 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC3O43542 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
XRCC3O43542 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.29■■□□□ 1
XRCC3O43542 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
XRCC3O43542 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
XRCC3O43542 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
XRCC3O43542 AP004609.3-201ENST00000610705 1884 ntBASIC21.28■■□□□ 1
XRCC3O43542 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
XRCC3O43542 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
XRCC3O43542 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
XRCC3O43542 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.28■■□□□ 1
XRCC3O43542 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.28■■□□□ 1
XRCC3O43542 RARRES2P7-201ENST00000567349 469 ntBASIC21.28■■□□□ 1
XRCC3O43542 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
XRCC3O43542 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
XRCC3O43542 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
XRCC3O43542 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
XRCC3O43542 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
XRCC3O43542 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
XRCC3O43542 AL391121.1-201ENST00000607967 1349 ntBASIC21.27■□□□□ 0.99
XRCC3O43542 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
XRCC3O43542 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.26■□□□□ 0.99
XRCC3O43542 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
XRCC3O43542 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
XRCC3O43542 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
XRCC3O43542 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
XRCC3O43542 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
XRCC3O43542 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC3O43542 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC3O43542 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC3O43542 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC3O43542 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC3O43542 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.24■□□□□ 0.99
XRCC3O43542 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
XRCC3O43542 WHAMMP2-203ENST00000563942 1603 ntBASIC21.23■□□□□ 0.99
XRCC3O43542 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.23■□□□□ 0.99
XRCC3O43542 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.23■□□□□ 0.99
XRCC3O43542 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
XRCC3O43542 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.22■□□□□ 0.99
XRCC3O43542 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.22■□□□□ 0.99
XRCC3O43542 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC3O43542 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
XRCC3O43542 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
XRCC3O43542 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
XRCC3O43542 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
XRCC3O43542 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
XRCC3O43542 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
XRCC3O43542 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
XRCC3O43542 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
XRCC3O43542 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.2■□□□□ 0.98
XRCC3O43542 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.2■□□□□ 0.98
XRCC3O43542 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.2■□□□□ 0.98
XRCC3O43542 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
XRCC3O43542 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
XRCC3O43542 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC3O43542 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
XRCC3O43542 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC3O43542 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC3O43542 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC3O43542 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
XRCC3O43542 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
XRCC3O43542 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.17■□□□□ 0.98
XRCC3O43542 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
XRCC3O43542 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
XRCC3O43542 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.16■□□□□ 0.98
XRCC3O43542 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.16■□□□□ 0.98
XRCC3O43542 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.16■□□□□ 0.98
XRCC3O43542 CAHM-201ENST00000604200 896 ntBASIC21.16■□□□□ 0.98
XRCC3O43542 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
XRCC3O43542 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
XRCC3O43542 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
XRCC3O43542 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.15■□□□□ 0.98
XRCC3O43542 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
XRCC3O43542 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
XRCC3O43542 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
XRCC3O43542 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
XRCC3O43542 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
XRCC3O43542 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.14■□□□□ 0.97
XRCC3O43542 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC3O43542 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC3O43542 ERN1-208ENST00000606895 2068 ntBASIC21.13■□□□□ 0.97
XRCC3O43542 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC3O43542 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC3O43542 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
XRCC3O43542 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.12■□□□□ 0.97
XRCC3O43542 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC3O43542 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC3O43542 AC142472.1-201ENST00000612013 1741 ntBASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms