Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC163A0A0D9SF12 RAP2CP1-202ENST00000605179 643 ntBASIC25.14■■□□□ 1.62
CCDC163A0A0D9SF12 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
CCDC163A0A0D9SF12 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC163A0A0D9SF12 BHLHE23-202ENST00000612929 1109 ntBASIC25.13■■□□□ 1.61
CCDC163A0A0D9SF12 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC163A0A0D9SF12 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC25.13■■□□□ 1.61
CCDC163A0A0D9SF12 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC163A0A0D9SF12 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC25.12■■□□□ 1.61
CCDC163A0A0D9SF12 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC163A0A0D9SF12 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC163A0A0D9SF12 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC163A0A0D9SF12 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC25.11■■□□□ 1.61
CCDC163A0A0D9SF12 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC25.11■■□□□ 1.61
CCDC163A0A0D9SF12 AC093536.1-201ENST00000569153 554 ntBASIC25.11■■□□□ 1.61
CCDC163A0A0D9SF12 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC163A0A0D9SF12 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC25.1■■□□□ 1.61
CCDC163A0A0D9SF12 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC163A0A0D9SF12 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.1■■□□□ 1.61
CCDC163A0A0D9SF12 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.1■■□□□ 1.61
CCDC163A0A0D9SF12 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC163A0A0D9SF12 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.1■■□□□ 1.61
CCDC163A0A0D9SF12 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC163A0A0D9SF12 AL592295.1-201ENST00000400984 884 ntBASIC25.09■■□□□ 1.61
CCDC163A0A0D9SF12 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC25.09■■□□□ 1.61
CCDC163A0A0D9SF12 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC25.09■■□□□ 1.61
CCDC163A0A0D9SF12 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.09■■□□□ 1.61
CCDC163A0A0D9SF12 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC25.09■■□□□ 1.61
CCDC163A0A0D9SF12 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
CCDC163A0A0D9SF12 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC163A0A0D9SF12 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.09■■□□□ 1.61
CCDC163A0A0D9SF12 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC163A0A0D9SF12 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
CCDC163A0A0D9SF12 AC010980.1-201ENST00000587192 1142 ntBASIC25.08■■□□□ 1.61
CCDC163A0A0D9SF12 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC163A0A0D9SF12 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
CCDC163A0A0D9SF12 MIR3960-201ENST00000583311 91 ntBASIC25.07■■□□□ 1.6
CCDC163A0A0D9SF12 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC25.07■■□□□ 1.6
CCDC163A0A0D9SF12 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC163A0A0D9SF12 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC163A0A0D9SF12 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC163A0A0D9SF12 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.06■■□□□ 1.6
CCDC163A0A0D9SF12 HYI-210ENST00000486909 905 ntTSL 5 BASIC25.06■■□□□ 1.6
CCDC163A0A0D9SF12 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.06■■□□□ 1.6
CCDC163A0A0D9SF12 MIR6765-201ENST00000614092 87 ntBASIC25.06■■□□□ 1.6
CCDC163A0A0D9SF12 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.05■■□□□ 1.6
CCDC163A0A0D9SF12 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC25.05■■□□□ 1.6
CCDC163A0A0D9SF12 YBX1P4-201ENST00000392794 808 ntBASIC25.05■■□□□ 1.6
CCDC163A0A0D9SF12 AC009299.2-201ENST00000482477 511 ntBASIC25.05■■□□□ 1.6
CCDC163A0A0D9SF12 SPCS2P3-201ENST00000500401 656 ntBASIC25.05■■□□□ 1.6
CCDC163A0A0D9SF12 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC163A0A0D9SF12 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
CCDC163A0A0D9SF12 AC139795.1-202ENST00000500444 432 ntBASIC25.04■■□□□ 1.6
CCDC163A0A0D9SF12 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC25.04■■□□□ 1.6
CCDC163A0A0D9SF12 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
CCDC163A0A0D9SF12 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC163A0A0D9SF12 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC25.03■■□□□ 1.6
CCDC163A0A0D9SF12 HES6-204ENST00000409182 863 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC163A0A0D9SF12 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC163A0A0D9SF12 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC163A0A0D9SF12 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC163A0A0D9SF12 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC163A0A0D9SF12 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC163A0A0D9SF12 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC163A0A0D9SF12 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC163A0A0D9SF12 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC163A0A0D9SF12 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25■■□□□ 1.59
CCDC163A0A0D9SF12 AC103834.1-201ENST00000520383 144 ntBASIC25■■□□□ 1.59
CCDC163A0A0D9SF12 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC163A0A0D9SF12 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC24.99■■□□□ 1.59
CCDC163A0A0D9SF12 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC163A0A0D9SF12 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC24.99■■□□□ 1.59
CCDC163A0A0D9SF12 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC163A0A0D9SF12 KRT8P33-201ENST00000508125 1423 ntBASIC24.99■■□□□ 1.59
CCDC163A0A0D9SF12 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC163A0A0D9SF12 AC018755.3-202ENST00000596210 929 ntBASIC24.99■■□□□ 1.59
CCDC163A0A0D9SF12 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.99■■□□□ 1.59
CCDC163A0A0D9SF12 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.99■■□□□ 1.59
CCDC163A0A0D9SF12 AC100797.4-201ENST00000631653 1827 ntBASIC24.98■■□□□ 1.59
CCDC163A0A0D9SF12 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.98■■□□□ 1.59
CCDC163A0A0D9SF12 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC163A0A0D9SF12 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC163A0A0D9SF12 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC163A0A0D9SF12 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC163A0A0D9SF12 MIR4508-201ENST00000584178 70 ntBASIC24.98■■□□□ 1.59
CCDC163A0A0D9SF12 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC163A0A0D9SF12 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.97■■□□□ 1.59
CCDC163A0A0D9SF12 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
CCDC163A0A0D9SF12 AC019069.1-201ENST00000610008 1333 ntBASIC24.96■■□□□ 1.59
CCDC163A0A0D9SF12 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC163A0A0D9SF12 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC163A0A0D9SF12 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC24.96■■□□□ 1.59
CCDC163A0A0D9SF12 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.96■■□□□ 1.59
CCDC163A0A0D9SF12 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
CCDC163A0A0D9SF12 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
CCDC163A0A0D9SF12 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC163A0A0D9SF12 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC163A0A0D9SF12 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
CCDC163A0A0D9SF12 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC163A0A0D9SF12 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.94■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms