Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 AL391807.1-203ENST00000604392 2365 ntBASIC21.76■■□□□ 1.07
RNF41Q9H4P4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 HLA-F-220ENST00000434407 884 ntBASIC21.76■■□□□ 1.07
RNF41Q9H4P4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 SDHAP2-201ENST00000455183 2001 ntBASIC21.76■■□□□ 1.07
RNF41Q9H4P4 AC092597.1-201ENST00000487352 616 ntBASIC21.76■■□□□ 1.07
RNF41Q9H4P4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 AL445228.2-201ENST00000605589 952 ntBASIC21.76■■□□□ 1.07
RNF41Q9H4P4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF41Q9H4P4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 AL031133.1-201ENST00000406807 723 ntBASIC21.75■■□□□ 1.07
RNF41Q9H4P4 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
RNF41Q9H4P4 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 AC083849.1-201ENST00000615227 514 ntBASIC21.74■■□□□ 1.07
RNF41Q9H4P4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
RNF41Q9H4P4 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 ZNF444P1-201ENST00000559497 298 ntBASIC21.73■■□□□ 1.07
RNF41Q9H4P4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 AL121956.5-201ENST00000625261 221 ntBASIC21.73■■□□□ 1.07
RNF41Q9H4P4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF41Q9H4P4 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.72■■□□□ 1.07
RNF41Q9H4P4 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF41Q9H4P4 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF41Q9H4P4 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF41Q9H4P4 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.72■■□□□ 1.07
RNF41Q9H4P4 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RNF41Q9H4P4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.72■■□□□ 1.07
RNF41Q9H4P4 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF41Q9H4P4 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms