Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 DUS1L-204ENST00000542088 1040 ntTSL 322.73■■□□□ 1.231e-12■□□□□ 10.7
DDX55Q8NHQ9 DUS1L-205ENST00000577574 473 ntTSL 518.11■□□□□ 0.491e-12■□□□□ 10.7
DDX55Q8NHQ9 DUS1L-212ENST00000579854 657 ntTSL 217.32■□□□□ 0.361e-12■□□□□ 10.7
DDX55Q8NHQ9 DUS1L-216ENST00000584871 676 ntTSL 215.69■□□□□ 0.11e-12■□□□□ 10.7
DDX55Q8NHQ9 PEBP1-202ENST00000542939 708 ntTSL 318.65■□□□□ 0.584e-22■□□□□ 10.7
DDX55Q8NHQ9 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.75■■□□□ 1.393e-6■□□□□ 10.7
DDX55Q8NHQ9 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.273e-6■□□□□ 10.7
DDX55Q8NHQ9 TPM4-207ENST00000588032 712 ntTSL 312.26□□□□□ -0.453e-6■□□□□ 10.7
DDX55Q8NHQ9 TPM4-214ENST00000591645 653 ntTSL 34.91□□□□□ -1.623e-6■□□□□ 10.7
DDX55Q8NHQ9 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.685e-12■□□□□ 10.7
DDX55Q8NHQ9 HM13-220ENST00000492709 1248 ntTSL 518.88■□□□□ 0.615e-12■□□□□ 10.7
DDX55Q8NHQ9 HM13-218ENST00000487281 757 ntTSL 318.47■□□□□ 0.555e-12■□□□□ 10.7
DDX55Q8NHQ9 HM13-206ENST00000460389 1075 ntTSL 517.76■□□□□ 0.435e-12■□□□□ 10.7
DDX55Q8NHQ9 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.6■□□□□ 0.255e-12■□□□□ 10.7
DDX55Q8NHQ9 HM13-211ENST00000468559 675 ntTSL 515.92■□□□□ 0.145e-12■□□□□ 10.7
DDX55Q8NHQ9 HM13-212ENST00000469097 801 ntTSL 514.57□□□□□ -0.085e-12■□□□□ 10.7
DDX55Q8NHQ9 HM13-221ENST00000493364 372 ntTSL 212.7□□□□□ -0.385e-12■□□□□ 10.7
DDX55Q8NHQ9 HM13-204ENST00000398174 3792 ntTSL 1 (best) BASIC11.52□□□□□ -0.575e-12■□□□□ 10.7
DDX55Q8NHQ9 HM13-225ENST00000619859 455 ntTSL 38.39□□□□□ -1.075e-12■□□□□ 10.7
DDX55Q8NHQ9 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.781e-29■□□□□ 10.7
DDX55Q8NHQ9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.441e-7■□□□□ 10.7
DDX55Q8NHQ9 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.831e-7■□□□□ 10.7
DDX55Q8NHQ9 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.711e-7■□□□□ 10.7
DDX55Q8NHQ9 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.461e-7■□□□□ 10.7
DDX55Q8NHQ9 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.411e-7■□□□□ 10.7
DDX55Q8NHQ9 EIF3G-212ENST00000592485 893 ntTSL 217.61■□□□□ 0.412e-9■□□□□ 10.7
DDX55Q8NHQ9 EIF3G-203ENST00000587168 352 ntTSL 413.4□□□□□ -0.262e-9■□□□□ 10.7
DDX55Q8NHQ9 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.293e-7■□□□□ 10.7
DDX55Q8NHQ9 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC27.39■■□□□ 1.983e-7■□□□□ 10.7
DDX55Q8NHQ9 HSPE1-205ENST00000465573 639 ntTSL 222.92■■□□□ 1.263e-7■□□□□ 10.7
DDX55Q8NHQ9 HSPE1-202ENST00000409468 570 ntTSL 2 BASIC9.3□□□□□ -0.923e-7■□□□□ 10.7
DDX55Q8NHQ9 HSPE1-204ENST00000463841 700 ntTSL 25.57□□□□□ -1.523e-7■□□□□ 10.7
DDX55Q8NHQ9 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.543e-7■□□□□ 10.7
DDX55Q8NHQ9 PSMB5-201ENST00000334454 796 ntTSL 522.88■■□□□ 1.257e-7■□□□□ 10.7
DDX55Q8NHQ9 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC22.88■■□□□ 1.257e-7■□□□□ 10.7
DDX55Q8NHQ9 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC19.64■□□□□ 0.737e-7■□□□□ 10.7
DDX55Q8NHQ9 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.447e-7■□□□□ 10.7
DDX55Q8NHQ9 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC17.82■□□□□ 0.447e-7■□□□□ 10.7
DDX55Q8NHQ9 PSMB5-206ENST00000555895 444 ntTSL 317.82■□□□□ 0.447e-7■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-C17orf49-202ENST00000547863 1662 ntTSL 227.49■■□□□ 1.991e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-C17orf49-204ENST00000607564 892 ntTSL 527.33■■□□□ 1.971e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-205ENST00000552176 1485 ntTSL 227.22■■□□□ 1.951e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-C17orf49-203ENST00000549775 1856 ntTSL 524.4■■□□□ 1.51e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC23.47■■□□□ 1.351e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-201ENST00000546395 952 ntTSL 1 (best)21.07■□□□□ 0.961e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC20.55■□□□□ 0.881e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.62■□□□□ 0.731e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-206ENST00000552321 739 ntTSL 219.15■□□□□ 0.661e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.621e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.361e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC16.15■□□□□ 0.181e-32■□□□□ 10.7
DDX55Q8NHQ9 RNASEK-208ENST00000570898 425 ntTSL 3 BASIC11.87□□□□□ -0.511e-32■□□□□ 10.7
DDX55Q8NHQ9 NUCB1-212ENST00000492367 1515 ntTSL 221.97■■□□□ 1.114e-7■□□□□ 10.7
DDX55Q8NHQ9 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.361e-51■□□□□ 10.7
DDX55Q8NHQ9 GPI-208ENST00000588991 2021 ntTSL 222.64■■□□□ 1.211e-51■□□□□ 10.7
DDX55Q8NHQ9 AC092073.1-201ENST00000592740 625 ntAPPRIS P1 TSL 320.9■□□□□ 0.941e-51■□□□□ 10.7
DDX55Q8NHQ9 GPI-204ENST00000586392 1706 ntTSL 217.73■□□□□ 0.431e-51■□□□□ 10.7
DDX55Q8NHQ9 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.37■□□□□ 0.211e-51■□□□□ 10.7
DDX55Q8NHQ9 GPI-203ENST00000586077 3053 nt11.46□□□□□ -0.571e-51■□□□□ 10.7
DDX55Q8NHQ9 GPI-202ENST00000415930 4000 ntTSL 2 BASIC8.65□□□□□ -1.031e-51■□□□□ 10.7
DDX55Q8NHQ9 NECTIN2-203ENST00000585601 650 ntTSL 319.31■□□□□ 0.682e-11■□□□□ 10.7
DDX55Q8NHQ9 EEF1D-235ENST00000530848 688 ntTSL 323.87■■□□□ 1.411e-13■□□□□ 10.7
DDX55Q8NHQ9 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.857e-7■□□□□ 10.7
DDX55Q8NHQ9 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC18.18■□□□□ 0.57e-7■□□□□ 10.7
DDX55Q8NHQ9 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.431e-10■□□□□ 10.7
DDX55Q8NHQ9 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.341e-10■□□□□ 10.7
DDX55Q8NHQ9 SMARCA1-201ENST00000371121 3564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.474e-22■□□□□ 10.7
DDX55Q8NHQ9 SMARCA1-205ENST00000617310 4291 ntTSL 210.59□□□□□ -0.714e-22■□□□□ 10.7
DDX55Q8NHQ9 SMARCA1-202ENST00000371122 4099 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.884e-22■□□□□ 10.7
DDX55Q8NHQ9 SMARCA1-203ENST00000371123 3948 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.974e-22■□□□□ 10.7
DDX55Q8NHQ9 HNRNPA2B1-206ENST00000490912 5328 ntTSL 215.94■□□□□ 0.142e-13■□□□□ 10.7
DDX55Q8NHQ9 HNRNPA2B1-203ENST00000360787 1724 ntTSL 515.91■□□□□ 0.142e-13■□□□□ 10.7
DDX55Q8NHQ9 HNRNPA2B1-204ENST00000463181 6284 ntTSL 215.27■□□□□ 0.042e-13■□□□□ 10.7
DDX55Q8NHQ9 HNRNPA2B1-202ENST00000356674 1711 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.122e-13■□□□□ 10.7
DDX55Q8NHQ9 HNRNPA2B1-208ENST00000618183 3539 ntTSL 5 BASIC11.43□□□□□ -0.582e-13■□□□□ 10.7
DDX55Q8NHQ9 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC8.57□□□□□ -1.042e-13■□□□□ 10.7
DDX55Q8NHQ9 MCM7-212ENST00000493352 533 ntTSL 215.51■□□□□ 0.072e-16■□□□□ 10.7
DDX55Q8NHQ9 MCM7-211ENST00000491245 648 ntTSL 1 (best)11.58□□□□□ -0.562e-16■□□□□ 10.7
DDX55Q8NHQ9 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.793e-7■□□□□ 10.7
DDX55Q8NHQ9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.743e-7■□□□□ 10.7
DDX55Q8NHQ9 UQCR11-204ENST00000593029 533 ntTSL 224.24■■□□□ 1.473e-7■□□□□ 10.7
DDX55Q8NHQ9 UQCR11-205ENST00000593264 409 ntTSL 324.24■■□□□ 1.473e-7■□□□□ 10.7
DDX55Q8NHQ9 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC24.24■■□□□ 1.473e-7■□□□□ 10.7
DDX55Q8NHQ9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC27.78■■■□□ 2.041e-6■□□□□ 10.7
DDX55Q8NHQ9 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC25.96■■□□□ 1.751e-6■□□□□ 10.7
DDX55Q8NHQ9 ACAA1-207ENST00000440176 1328 ntTSL 225.34■■□□□ 1.651e-6■□□□□ 10.7
DDX55Q8NHQ9 ACAA1-206ENST00000423611 877 ntTSL 324.51■■□□□ 1.511e-6■□□□□ 10.7
DDX55Q8NHQ9 ACAA1-204ENST00000418880 737 ntTSL 324.27■■□□□ 1.481e-6■□□□□ 10.7
DDX55Q8NHQ9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.461e-6■□□□□ 10.7
DDX55Q8NHQ9 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC23.31■■□□□ 1.321e-6■□□□□ 10.7
DDX55Q8NHQ9 ACAA1-203ENST00000411549 1944 ntTSL 1 (best)22.54■■□□□ 1.21e-6■□□□□ 10.7
DDX55Q8NHQ9 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC22.47■■□□□ 1.191e-6■□□□□ 10.7
DDX55Q8NHQ9 ACAA1-208ENST00000447223 915 ntTSL 320.69■□□□□ 0.91e-6■□□□□ 10.7
DDX55Q8NHQ9 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.673e-6■□□□□ 10.7
DDX55Q8NHQ9 USP34-202ENST00000411912 4309 ntTSL 54.49□□□□□ -1.693e-6■□□□□ 10.7
DDX55Q8NHQ9 USP34-203ENST00000436269 1827 ntTSL 53.94□□□□□ -1.783e-6■□□□□ 10.7
DDX55Q8NHQ9 TRMT2A-213ENST00000480339 762 ntTSL 215.52■□□□□ 0.082e-8■□□□□ 10.7
DDX55Q8NHQ9 CPNE1-205ENST00000401607 1795 ntTSL 529.01■■■□□ 2.234e-6■□□□□ 10.7
DDX55Q8NHQ9 CPNE1-216ENST00000437340 1755 ntTSL 1 (best)28.39■■■□□ 2.144e-6■□□□□ 10.7
DDX55Q8NHQ9 MT-TI-201ENST00000387365 69 ntBASIC1.42□□□□□ -2.182e-65■□□□□ 10.7
Retrieved 100 of 15,504 protein–RNA pairs in 123.1 ms