RNA–Protein interactions for RNA: ENST00000591645.1

TPM4-214, Transcript of tropomyosin 4, humanhuman

TSL 3

Gene TPM4, Length 653 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-214ENST00000591645 AEBP2Q6ZN18 517 aaPredicted RBP24.42■■□□□ 1.5
TPM4-214ENST00000591645 CHIC1Q5VXU3 224 aa23.11■■□□□ 1.29
TPM4-214ENST00000591645 SENP3Q9H4L4 574 aaPredicted RBP20.76■□□□□ 0.91
TPM4-214ENST00000591645 PHF23Q9BUL5 403 aaPredicted RBP20.54■□□□□ 0.88
TPM4-214ENST00000591645 FOXD1Q16676 465 aa19.41■□□□□ 0.7
TPM4-214ENST00000591645 PLPPR3Q6T4P5 718 aa18.43■□□□□ 0.54
TPM4-214ENST00000591645 PPP6R1Q9UPN7 881 aa18.16■□□□□ 0.5
TPM4-214ENST00000591645 MSH5O43196 834 aa18.11■□□□□ 0.49
TPM4-214ENST00000591645 PIAS4Q8N2W9 510 aaPredicted RBP18.11■□□□□ 0.49
TPM4-214ENST00000591645 ADRA2BP18089 450 aa18.1■□□□□ 0.49
TPM4-214ENST00000591645 POTEDQ86YR6 584 aa17.79■□□□□ 0.44
TPM4-214ENST00000591645 MAPK8IP2Q13387 824 aaPredicted RBP16.65■□□□□ 0.26
TPM4-214ENST00000591645 DMRT2Q9Y5R5 561 aa16.47■□□□□ 0.23
TPM4-214ENST00000591645 SCAF1Q9H7N4 1312 aaKnown RBP16.46■□□□□ 0.23
TPM4-214ENST00000591645 PPP4R3CPQ6ZMV5 832 aa16.18■□□□□ 0.18
TPM4-214ENST00000591645 CNKSR2Q8WXI2 1034 aa15.86■□□□□ 0.13
TPM4-214ENST00000591645 HOXD11P31277 338 aaPredicted RBP15.85■□□□□ 0.13
TPM4-214ENST00000591645 DCAF8L1A6NGE4 600 aa15.84■□□□□ 0.13
TPM4-214ENST00000591645 RNF216Q9NWF9 866 aaPredicted RBP15.72■□□□□ 0.11
TPM4-214ENST00000591645 CACNB1Q02641 598 aaPredicted RBP15.6■□□□□ 0.09
TPM4-214ENST00000591645 NCBP3Q53F19 620 aaKnown RBP15.51■□□□□ 0.07
TPM4-214ENST00000591645 RNF39Q9H2S5 420 aa15.48■□□□□ 0.07
TPM4-214ENST00000591645 NPM3O75607 178 aaKnown RBP15.33■□□□□ 0.04
TPM4-214ENST00000591645 DNAJC5BQ9UF47 199 aa15.25■□□□□ 0.03
TPM4-214ENST00000591645 C1QBPQ07021 282 aaKnown RBP15.23■□□□□ 0.03
TPM4-214ENST00000591645 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.13■□□□□ 0.014e-6■□□□□ 8.4
TPM4-214ENST00000591645 KCNA4P22459 653 aa15.04■□□□□ -0
TPM4-214ENST00000591645 U3KPZ7 1027 aaPredicted RBP14.81□□□□□ -0.04
TPM4-214ENST00000591645 SLC4A2P04920 1241 aa14.67□□□□□ -0.06
TPM4-214ENST00000591645 SPINK5Q9NQ38 1064 aaPredicted RBP14.63□□□□□ -0.07
TPM4-214ENST00000591645 CAPN15O75808 1086 aa14.59□□□□□ -0.07
TPM4-214ENST00000591645 DSG3P32926 999 aa14.51□□□□□ -0.09
TPM4-214ENST00000591645 TRHP20396 242 aaPredicted RBP14.36□□□□□ -0.11
TPM4-214ENST00000591645 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.3□□□□□ -0.12
TPM4-214ENST00000591645 APLP2Q06481 763 aa14.3□□□□□ -0.12
TPM4-214ENST00000591645 HNRNPUL2Q1KMD3 747 aaKnown RBP14.3□□□□□ -0.12
TPM4-214ENST00000591645 ABCB7O75027 752 aa14.27□□□□□ -0.13
TPM4-214ENST00000591645 SLC4A1APQ9BWU0 796 aaKnown RBP14.27□□□□□ -0.13
TPM4-214ENST00000591645 ZNF219Q9P2Y4 722 aaPredicted RBP14.27□□□□□ -0.13
TPM4-214ENST00000591645 SAMD1Q6SPF0 538 aaPredicted RBP14.24□□□□□ -0.13
TPM4-214ENST00000591645 MYCNP04198 464 aaPredicted RBP14.14□□□□□ -0.15
TPM4-214ENST00000591645 FOXD4L1Q9NU39 408 aa13.99□□□□□ -0.17
TPM4-214ENST00000591645 POLA2Q14181 598 aa13.96□□□□□ -0.17
TPM4-214ENST00000591645 POTEHQ6S545 545 aa13.93□□□□□ -0.18
TPM4-214ENST00000591645 ATF5Q9Y2D1 282 aaPredicted RBP13.9□□□□□ -0.18
TPM4-214ENST00000591645 ZBTB22O15209 634 aa13.84□□□□□ -0.19
TPM4-214ENST00000591645 RBM42Q9BTD8 480 aaKnown RBP13.78□□□□□ -0.2
TPM4-214ENST00000591645 ZBTB12Q9Y330 459 aaPredicted RBP13.59□□□□□ -0.23
TPM4-214ENST00000591645 CHRDL2Q6WN34 429 aa13.54□□□□□ -0.24
TPM4-214ENST00000591645 CSRNP3Q8WYN3 585 aa13.54□□□□□ -0.24
TPM4-214ENST00000591645 ATXN8OSP0DMR3 200 aa13.53□□□□□ -0.24
TPM4-214ENST00000591645 EHMT2Q96KQ7 1210 aa13.52□□□□□ -0.25
TPM4-214ENST00000591645 OSCARQ8IYS5 282 aa13.51□□□□□ -0.25
TPM4-214ENST00000591645 AKT1S1Q96B36 256 aa13.48□□□□□ -0.25
TPM4-214ENST00000591645 REM2Q8IYK8 340 aaPredicted RBP13.39□□□□□ -0.27
TPM4-214ENST00000591645 FBLN2P98095 1184 aa13.28□□□□□ -0.28
TPM4-214ENST00000591645 PITPNM1O00562 1244 aa13.25□□□□□ -0.29
TPM4-214ENST00000591645 MKRN4PQ13434 485 aaPredicted RBP13.24□□□□□ -0.29
TPM4-214ENST00000591645 PIP4P2Q8N4L2 257 aa13.23□□□□□ -0.29
TPM4-214ENST00000591645 SPDYE2BA6NHP3 402 aa13.2□□□□□ -0.3
TPM4-214ENST00000591645 SPDYE6P0CI01 402 aa13.2□□□□□ -0.3
TPM4-214ENST00000591645 SPDYE2Q495Y8 402 aa13.2□□□□□ -0.3
TPM4-214ENST00000591645 FXR2P51116 673 aaKnown RBP eCLIP13.13□□□□□ -0.31
TPM4-214ENST00000591645 ZNF692Q9BU19 519 aaPredicted RBP13.07□□□□□ -0.32
TPM4-214ENST00000591645 SP7Q8TDD2 431 aaPredicted RBP13.03□□□□□ -0.32
TPM4-214ENST00000591645 SSUH2Q9Y2M2 353 aa13.03□□□□□ -0.32
TPM4-214ENST00000591645 CLEC11AQ9Y240 323 aa13.01□□□□□ -0.33
TPM4-214ENST00000591645 HAX1O00165 279 aa13□□□□□ -0.33
TPM4-214ENST00000591645 SPDYE1Q8NFV5 336 aaPredicted RBP12.99□□□□□ -0.33
TPM4-214ENST00000591645 PRKAR2AP13861 404 aaKnown RBP12.91□□□□□ -0.34
TPM4-214ENST00000591645 PABPN1Q86U42 306 aaKnown RBP eCLIP12.89□□□□□ -0.35
TPM4-214ENST00000591645 EVX2Q03828 476 aa12.88□□□□□ -0.35
TPM4-214ENST00000591645 CHADLQ6NUI6 762 aa12.79□□□□□ -0.36
TPM4-214ENST00000591645 PRR29P0C7W0 189 aa12.77□□□□□ -0.37
TPM4-214ENST00000591645 C19orf67A6NJJ6 358 aa12.71□□□□□ -0.37
TPM4-214ENST00000591645 SPDYE4A6NLX3 237 aa12.57□□□□□ -0.4
TPM4-214ENST00000591645 FARP1Q9Y4F1 1045 aaPredicted RBP12.56□□□□□ -0.4
TPM4-214ENST00000591645 GABBR2O75899 941 aa12.54□□□□□ -0.4
TPM4-214ENST00000591645 CD44P16070 742 aaKnown RBP12.49□□□□□ -0.41
TPM4-214ENST00000591645 CREBZFQ9NS37 354 aa12.47□□□□□ -0.41
TPM4-214ENST00000591645 STAG3Q9UJ98 1225 aa12.47□□□□□ -0.41
TPM4-214ENST00000591645 PROM2Q8N271 834 aa12.34□□□□□ -0.43
TPM4-214ENST00000591645 ZRANB1Q9UGI0 708 aa12.32□□□□□ -0.44
TPM4-214ENST00000591645 POTEIP0CG38 1075 aa12.3□□□□□ -0.44
TPM4-214ENST00000591645 ZNF579Q8NAF0 562 aaKnown RBP12.27□□□□□ -0.45
TPM4-214ENST00000591645 MNX1P50219 401 aaPredicted RBP12.25□□□□□ -0.45
TPM4-214ENST00000591645 CLCN6P51797 869 aa12.24□□□□□ -0.45
TPM4-214ENST00000591645 FKBP8Q14318 412 aa12.24□□□□□ -0.45
TPM4-214ENST00000591645 LHX8Q68G74 356 aa12.23□□□□□ -0.45
TPM4-214ENST00000591645 NPM1P06748 294 aaKnown RBP eCLIP12.19□□□□□ -0.46
TPM4-214ENST00000591645 GALR2O43603 387 aaPredicted RBP12.18□□□□□ -0.46
TPM4-214ENST00000591645 DCBLD2Q96PD2 775 aa12.18□□□□□ -0.46
TPM4-214ENST00000591645 PAK3O75914 559 aaPredicted RBP12.16□□□□□ -0.46
TPM4-214ENST00000591645 PHF12Q96QT6 1004 aa12.16□□□□□ -0.46
TPM4-214ENST00000591645 TSPYL2Q9H2G4 693 aaPredicted RBP12.03□□□□□ -0.48
TPM4-214ENST00000591645 MIER1Q8N108 512 aa12.01□□□□□ -0.49
TPM4-214ENST00000591645 MS4A3Q96HJ5 214 aa11.98□□□□□ -0.49
TPM4-214ENST00000591645 PELP1Q8IZL8 1130 aaKnown RBP11.96□□□□□ -0.49
TPM4-214ENST00000591645 CCDC61Q9Y6R9 512 aa11.95□□□□□ -0.5
TPM4-214ENST00000591645 PLEKHG5O94827 1062 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms