Protein–RNA interactions for Protein: Q2KHR2

RFX7, DNA-binding protein RFX7, humanhuman

Predictions only

Length 1,363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX7Q2KHR2 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 AL136038.4-201ENST00000603606 1261 ntBASIC22.31■■□□□ 1.16
RFX7Q2KHR2 AC092119.3-201ENST00000612618 583 ntBASIC22.31■■□□□ 1.16
RFX7Q2KHR2 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 EFTUD1P1-204ENST00000560401 1798 ntBASIC22.31■■□□□ 1.16
RFX7Q2KHR2 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFX7Q2KHR2 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 UROS-202ENST00000368778 1556 ntTSL 2 BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 AC009102.3-201ENST00000623118 1491 ntBASIC22.3■■□□□ 1.16
RFX7Q2KHR2 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFX7Q2KHR2 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 AC011498.5-201ENST00000592027 486 ntBASIC22.29■■□□□ 1.16
RFX7Q2KHR2 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 AL391807.1-203ENST00000604392 2365 ntBASIC22.29■■□□□ 1.16
RFX7Q2KHR2 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 AC016734.2-201ENST00000624325 1377 ntBASIC22.29■■□□□ 1.16
RFX7Q2KHR2 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFX7Q2KHR2 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 MIR662-201ENST00000384847 95 ntBASIC22.28■■□□□ 1.16
RFX7Q2KHR2 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 WDR88-203ENST00000592765 651 ntTSL 5 BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC22.28■■□□□ 1.16
RFX7Q2KHR2 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC22.27■■□□□ 1.16
RFX7Q2KHR2 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC22.27■■□□□ 1.16
RFX7Q2KHR2 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC22.27■■□□□ 1.16
RFX7Q2KHR2 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC22.27■■□□□ 1.16
RFX7Q2KHR2 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms