Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SDC1P18827 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC1P18827 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
SDC1P18827 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.62■□□□□ 0.41
SDC1P18827 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
SDC1P18827 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC1P18827 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.62■□□□□ 0.41
SDC1P18827 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.62■□□□□ 0.41
SDC1P18827 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
SDC1P18827 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.62■□□□□ 0.41
SDC1P18827 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC1P18827 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC1P18827 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC1P18827 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.62■□□□□ 0.41
SDC1P18827 AC036111.1-201ENST00000533973 1582 ntBASIC17.62■□□□□ 0.41
SDC1P18827 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC1P18827 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC1P18827 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC1P18827 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SDC1P18827 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC1P18827 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SDC1P18827 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.61■□□□□ 0.41
SDC1P18827 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.61■□□□□ 0.41
SDC1P18827 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.61■□□□□ 0.41
SDC1P18827 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.61■□□□□ 0.41
SDC1P18827 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.61■□□□□ 0.41
SDC1P18827 AP003071.4-201ENST00000562276 1284 ntBASIC17.61■□□□□ 0.41
SDC1P18827 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.61■□□□□ 0.41
SDC1P18827 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.61■□□□□ 0.41
SDC1P18827 REXO1L9P-201ENST00000604264 2108 ntBASIC17.61■□□□□ 0.41
SDC1P18827 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SDC1P18827 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.61■□□□□ 0.41
SDC1P18827 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SDC1P18827 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.61■□□□□ 0.41
SDC1P18827 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.61■□□□□ 0.41
SDC1P18827 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.61■□□□□ 0.41
SDC1P18827 AC099343.3-201ENST00000605834 2503 ntBASIC17.61■□□□□ 0.41
SDC1P18827 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC1P18827 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.61■□□□□ 0.41
SDC1P18827 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC1P18827 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC1P18827 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.61■□□□□ 0.41
SDC1P18827 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC1P18827 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SDC1P18827 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SDC1P18827 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SDC1P18827 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.6■□□□□ 0.41
SDC1P18827 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SDC1P18827 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SDC1P18827 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.6■□□□□ 0.41
SDC1P18827 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
SDC1P18827 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.6■□□□□ 0.41
SDC1P18827 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.6■□□□□ 0.41
SDC1P18827 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.6■□□□□ 0.41
SDC1P18827 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.6■□□□□ 0.41
SDC1P18827 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.6■□□□□ 0.41
SDC1P18827 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SDC1P18827 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.6■□□□□ 0.41
SDC1P18827 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC1P18827 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC1P18827 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SDC1P18827 AC138028.4-201ENST00000564984 1845 ntBASIC17.59■□□□□ 0.41
SDC1P18827 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC1P18827 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SDC1P18827 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC1P18827 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SDC1P18827 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.59■□□□□ 0.41
SDC1P18827 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC1P18827 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.59■□□□□ 0.41
SDC1P18827 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.59■□□□□ 0.41
SDC1P18827 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.59■□□□□ 0.41
SDC1P18827 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.59■□□□□ 0.41
SDC1P18827 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC1P18827 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC1P18827 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDC1P18827 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms