Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.117e-9■□□□□ 8.9
SMNDC1O75940 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.786e-9■□□□□ 8.9
SMNDC1O75940 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.176e-9■□□□□ 8.9
SMNDC1O75940 CDC20-204ENST00000482046 422 ntTSL 29.58□□□□□ -0.886e-9■□□□□ 8.9
SMNDC1O75940 SDCCAG3-207ENST00000461693 869 ntTSL 210.51□□□□□ -0.731e-8■□□□□ 8.9
SMNDC1O75940 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.63■■□□□ 1.852e-7■□□□□ 8.9
SMNDC1O75940 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.612e-7■□□□□ 8.9
SMNDC1O75940 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC24.88■■□□□ 1.572e-7■□□□□ 8.9
SMNDC1O75940 MBOAT7-206ENST00000437868 2033 ntTSL 1 (best)21.84■■□□□ 1.092e-7■□□□□ 8.9
SMNDC1O75940 MBOAT7-207ENST00000449249 707 ntTSL 518.26■□□□□ 0.512e-7■□□□□ 8.9
SMNDC1O75940 MBOAT7-212ENST00000494142 3039 ntTSL 1 (best)17.88■□□□□ 0.452e-7■□□□□ 8.9
SMNDC1O75940 SLC22A31-204ENST00000568161 651 ntTSL 313.2□□□□□ -0.35e-10■□□□□ 8.9
SMNDC1O75940 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.61e-7■□□□□ 8.9
SMNDC1O75940 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.051e-7■□□□□ 8.9
SMNDC1O75940 SF1-211ENST00000448404 2778 ntTSL 1 (best)14.97□□□□□ -0.011e-7■□□□□ 8.9
SMNDC1O75940 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC14.96□□□□□ -0.011e-7■□□□□ 8.9
SMNDC1O75940 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.96□□□□□ -0.021e-7■□□□□ 8.9
SMNDC1O75940 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.35□□□□□ -0.111e-7■□□□□ 8.9
SMNDC1O75940 SF1-204ENST00000377390 3470 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.321e-7■□□□□ 8.9
SMNDC1O75940 SF1-216ENST00000486867 875 ntTSL 311.69□□□□□ -0.541e-7■□□□□ 8.9
SMNDC1O75940 SF1-218ENST00000489544 584 ntTSL 27.37□□□□□ -1.231e-7■□□□□ 8.9
SMNDC1O75940 ACADVL-230ENST00000582379 833 ntTSL 39.12□□□□□ -0.951e-6■□□□□ 8.9
SMNDC1O75940 HNRNPM-213ENST00000600092 1086 ntTSL 216.69■□□□□ 0.264e-8■□□□□ 8.9
SMNDC1O75940 SLC6A8-209ENST00000476466 470 ntTSL 312.64□□□□□ -0.392e-9■□□□□ 8.8
SMNDC1O75940 MAN2A2-228ENST00000561047 1057 ntTSL 516.14■□□□□ 0.173e-7■□□□□ 8.8
SMNDC1O75940 MAN2A2-213ENST00000559374 851 ntTSL 515□□□□□ -0.013e-7■□□□□ 8.8
SMNDC1O75940 MAN2A2-202ENST00000557865 2671 ntTSL 214.72□□□□□ -0.053e-7■□□□□ 8.8
SMNDC1O75940 MAN2A2-201ENST00000360468 6268 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.543e-7■□□□□ 8.8
SMNDC1O75940 MAN2A2-230ENST00000561448 1443 ntTSL 210.24□□□□□ -0.773e-7■□□□□ 8.8
SMNDC1O75940 MVK-205ENST00000537237 1296 ntTSL 525.68■■□□□ 1.76e-6■□□□□ 8.8
SMNDC1O75940 MVK-208ENST00000539696 608 ntTSL 5 BASIC25.09■■□□□ 1.616e-6■□□□□ 8.8
SMNDC1O75940 MVK-203ENST00000447878 1644 ntTSL 223.81■■□□□ 1.46e-6■□□□□ 8.8
SMNDC1O75940 MVK-211ENST00000545774 702 ntTSL 323.42■■□□□ 1.346e-6■□□□□ 8.8
SMNDC1O75940 TRIM28-204ENST00000594806 861 ntTSL 522.95■■□□□ 1.261e-13■□□□□ 8.8
SMNDC1O75940 COL18A1-207ENST00000473212 2515 ntTSL 222.18■■□□□ 1.146e-6■□□□□ 8.8
SMNDC1O75940 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.76■■□□□ 1.076e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.53■■□□□ 1.046e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.74■□□□□ 0.916e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.65■□□□□ 0.96e-6■□□□□ 8.8
SMNDC1O75940 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.676e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.626e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.75■□□□□ 0.596e-6■□□□□ 8.8
SMNDC1O75940 GPI-212ENST00000589985 1516 ntTSL 318.66■□□□□ 0.583e-7■□□□□ 8.8
SMNDC1O75940 MVK-212ENST00000546277 886 ntTSL 518.09■□□□□ 0.496e-6■□□□□ 8.8
SMNDC1O75940 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.466e-6■□□□□ 8.8
SMNDC1O75940 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.51■□□□□ 0.396e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-210ENST00000522397 852 ntTSL 317.43■□□□□ 0.386e-6■□□□□ 8.8
SMNDC1O75940 CBX8-203ENST00000427800 665 ntTSL 217.36■□□□□ 0.376e-6■□□□□ 8.8
SMNDC1O75940 CBX8-204ENST00000485449 581 ntTSL 317.34■□□□□ 0.376e-6■□□□□ 8.8
SMNDC1O75940 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.32■□□□□ 0.366e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-231ENST00000557433 1904 ntTSL 1 (best)17.25■□□□□ 0.356e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.25■□□□□ 0.356e-6■□□□□ 8.8
SMNDC1O75940 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.286e-6■□□□□ 8.8
SMNDC1O75940 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.266e-6■□□□□ 8.8
SMNDC1O75940 BSG-205ENST00000571735 2155 ntTSL 216.36■□□□□ 0.216e-6■□□□□ 8.8
SMNDC1O75940 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.26e-6■□□□□ 8.8
SMNDC1O75940 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.24■□□□□ 0.196e-6■□□□□ 8.8
SMNDC1O75940 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.136e-6■□□□□ 8.8
SMNDC1O75940 MVK-216ENST00000636996 1725 ntTSL 515.8■□□□□ 0.126e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.77■□□□□ 0.126e-6■□□□□ 8.8
SMNDC1O75940 ARVCF-209ENST00000487793 863 ntTSL 215.74■□□□□ 0.116e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-226ENST00000556825 2215 ntTSL 1 (best)15.71■□□□□ 0.116e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.65■□□□□ 0.16e-6■□□□□ 8.8
SMNDC1O75940 CBX8-202ENST00000413392 777 ntTSL 315.34■□□□□ 0.056e-6■□□□□ 8.8
SMNDC1O75940 MVK-206ENST00000539335 834 ntTSL 315.19■□□□□ 0.026e-6■□□□□ 8.8
SMNDC1O75940 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.96□□□□□ -0.026e-6■□□□□ 8.8
SMNDC1O75940 MVK-215ENST00000636529 1509 ntTSL 514.55□□□□□ -0.086e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-205ENST00000422854 582 ntTSL 414.29□□□□□ -0.126e-6■□□□□ 8.8
SMNDC1O75940 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.2□□□□□ -0.146e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-222ENST00000555774 2311 ntTSL 1 (best)13.92□□□□□ -0.186e-6■□□□□ 8.8
SMNDC1O75940 GPI-204ENST00000586392 1706 ntTSL 213.85□□□□□ -0.193e-7■□□□□ 8.8
SMNDC1O75940 TRIM28-203ENST00000593582 533 ntTSL 313.73□□□□□ -0.211e-13■□□□□ 8.8
SMNDC1O75940 MVK-204ENST00000535044 548 ntTSL 413.59□□□□□ -0.236e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-201ENST00000328923 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.276e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-207ENST00000521086 2966 ntTSL 1 (best)13.34□□□□□ -0.276e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-207ENST00000553837 2152 ntTSL 513.17□□□□□ -0.36e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-205ENST00000553474 1765 ntTSL 2 BASIC13.09□□□□□ -0.316e-6■□□□□ 8.8
SMNDC1O75940 TSC1-206ENST00000490179 681 ntTSL 313.07□□□□□ -0.326e-6■□□□□ 8.8
SMNDC1O75940 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.02□□□□□ -0.336e-6■□□□□ 8.8
SMNDC1O75940 TSC1-205ENST00000475903 820 ntTSL 413.01□□□□□ -0.336e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-229ENST00000557348 1659 ntTSL 213.01□□□□□ -0.336e-6■□□□□ 8.8
SMNDC1O75940 MVK-213ENST00000625889 2591 ntTSL 1 (best) BASIC12.91□□□□□ -0.346e-6■□□□□ 8.8
SMNDC1O75940 KBTBD2-207ENST00000485611 537 ntTSL 412.86□□□□□ -0.356e-6■□□□□ 8.8
SMNDC1O75940 ARVCF-210ENST00000492625 631 ntTSL 312.84□□□□□ -0.356e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC12.79□□□□□ -0.366e-6■□□□□ 8.8
SMNDC1O75940 MARK3-201ENST00000216288 2911 ntTSL 1 (best) BASIC12.72□□□□□ -0.376e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-217ENST00000555116 1885 ntTSL 212.65□□□□□ -0.386e-6■□□□□ 8.8
SMNDC1O75940 TRIM28-211ENST00000597968 504 ntTSL 212.26□□□□□ -0.451e-13■□□□□ 8.8
SMNDC1O75940 SHMT2-212ENST00000554467 3416 ntTSL 212.23□□□□□ -0.456e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-204ENST00000420829 582 ntTSL 412.13□□□□□ -0.476e-6■□□□□ 8.8
SMNDC1O75940 MVK-202ENST00000392727 1770 ntTSL 2 BASIC11.78□□□□□ -0.526e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-233ENST00000557529 1369 ntTSL 211.53□□□□□ -0.566e-6■□□□□ 8.8
SMNDC1O75940 SDE2-201ENST00000272091 3975 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.596e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-208ENST00000436590 559 ntTSL 410.96□□□□□ -0.656e-6■□□□□ 8.8
SMNDC1O75940 TSC1-207ENST00000493467 2219 ntTSL 1 (best)10.08□□□□□ -0.86e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-220ENST00000555634 964 ntTSL 59.93□□□□□ -0.826e-6■□□□□ 8.8
SMNDC1O75940 MARK3-223ENST00000561071 746 ntTSL 39.81□□□□□ -0.846e-6■□□□□ 8.8
SMNDC1O75940 MARK3-207ENST00000553942 2298 ntTSL 1 (best) BASIC9.67□□□□□ -0.866e-6■□□□□ 8.8
SMNDC1O75940 MARK3-226ENST00000561314 724 ntTSL 39.6□□□□□ -0.876e-6■□□□□ 8.8
SMNDC1O75940 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC9.53□□□□□ -0.886e-6■□□□□ 8.8
Retrieved 100 of 11,362 protein–RNA pairs in 221.6 ms