Protein–RNA interactions for Protein: P18206

VCL, Vinculin, humanhuman

Predictions only

Length 1,134 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCLP18206 ATP5G1P1-201ENST00000448724 379 ntBASIC18.62■□□□□ 0.57
VCLP18206 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.62■□□□□ 0.57
VCLP18206 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.62■□□□□ 0.57
VCLP18206 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.62■□□□□ 0.57
VCLP18206 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.62■□□□□ 0.57
VCLP18206 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.62■□□□□ 0.57
VCLP18206 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCLP18206 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCLP18206 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCLP18206 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
VCLP18206 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCLP18206 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCLP18206 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.62■□□□□ 0.57
VCLP18206 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.62■□□□□ 0.57
VCLP18206 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCLP18206 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCLP18206 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCLP18206 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCLP18206 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCLP18206 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.61■□□□□ 0.57
VCLP18206 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCLP18206 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCLP18206 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCLP18206 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCLP18206 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.61■□□□□ 0.57
VCLP18206 AL137013.1-201ENST00000432946 1228 ntBASIC18.61■□□□□ 0.57
VCLP18206 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VCLP18206 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
VCLP18206 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCLP18206 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCLP18206 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.6■□□□□ 0.57
VCLP18206 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.6■□□□□ 0.57
VCLP18206 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
VCLP18206 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.6■□□□□ 0.57
VCLP18206 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.6■□□□□ 0.57
VCLP18206 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
VCLP18206 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
VCLP18206 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
VCLP18206 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCLP18206 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.59■□□□□ 0.57
VCLP18206 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.59■□□□□ 0.57
VCLP18206 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.59■□□□□ 0.57
VCLP18206 FAM87A-204ENST00000613235 858 ntBASIC18.59■□□□□ 0.57
VCLP18206 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.59■□□□□ 0.57
VCLP18206 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.59■□□□□ 0.57
VCLP18206 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
VCLP18206 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VCLP18206 AC068880.1-201ENST00000507289 2297 ntBASIC18.58■□□□□ 0.57
VCLP18206 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
VCLP18206 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCLP18206 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
VCLP18206 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCLP18206 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCLP18206 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCLP18206 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VCLP18206 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VCLP18206 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.58■□□□□ 0.57
VCLP18206 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCLP18206 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VCLP18206 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.58■□□□□ 0.57
VCLP18206 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
VCLP18206 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
VCLP18206 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms