Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
LDLRP01130 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 CYP2D8P-201ENST00000433633 1490 ntBASIC17.9■□□□□ 0.46
LDLRP01130 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 SDHAP1-207ENST00000440850 2000 ntBASIC17.9■□□□□ 0.46
LDLRP01130 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.9■□□□□ 0.46
LDLRP01130 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.9■□□□□ 0.46
LDLRP01130 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.9■□□□□ 0.46
LDLRP01130 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.9■□□□□ 0.46
LDLRP01130 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.9■□□□□ 0.46
LDLRP01130 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 AC010947.1-201ENST00000623454 693 ntBASIC17.9■□□□□ 0.46
LDLRP01130 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.9■□□□□ 0.46
LDLRP01130 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.9■□□□□ 0.46
LDLRP01130 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.9■□□□□ 0.46
LDLRP01130 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LDLRP01130 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LDLRP01130 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.46
LDLRP01130 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.89■□□□□ 0.46
LDLRP01130 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
LDLRP01130 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LDLRP01130 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LDLRP01130 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDLRP01130 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LDLRP01130 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.89■□□□□ 0.45
LDLRP01130 FITM1-202ENST00000559294 800 ntBASIC17.89■□□□□ 0.45
LDLRP01130 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.89■□□□□ 0.45
LDLRP01130 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.89■□□□□ 0.45
LDLRP01130 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDLRP01130 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
LDLRP01130 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDLRP01130 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDLRP01130 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.89■□□□□ 0.45
LDLRP01130 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDLRP01130 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
LDLRP01130 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.89■□□□□ 0.45
LDLRP01130 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
LDLRP01130 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.89■□□□□ 0.45
LDLRP01130 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDLRP01130 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.88■□□□□ 0.45
LDLRP01130 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
LDLRP01130 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.88■□□□□ 0.45
LDLRP01130 AC067852.2-201ENST00000590513 2313 ntBASIC17.88■□□□□ 0.45
LDLRP01130 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.88■□□□□ 0.45
LDLRP01130 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.88■□□□□ 0.45
LDLRP01130 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.88■□□□□ 0.45
LDLRP01130 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.88■□□□□ 0.45
LDLRP01130 AL390955.1-201ENST00000428694 934 ntBASIC17.88■□□□□ 0.45
LDLRP01130 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.88■□□□□ 0.45
LDLRP01130 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.88■□□□□ 0.45
LDLRP01130 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
LDLRP01130 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.88■□□□□ 0.45
LDLRP01130 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.88■□□□□ 0.45
LDLRP01130 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LDLRP01130 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
LDLRP01130 AC104417.2-201ENST00000562989 1793 ntBASIC17.88■□□□□ 0.45
LDLRP01130 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
LDLRP01130 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.88■□□□□ 0.45
LDLRP01130 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LDLRP01130 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
LDLRP01130 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 TFP1-202ENST00000475455 1573 ntBASIC17.87■□□□□ 0.45
LDLRP01130 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.87■□□□□ 0.45
LDLRP01130 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.87■□□□□ 0.45
LDLRP01130 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
LDLRP01130 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.87■□□□□ 0.45
LDLRP01130 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
LDLRP01130 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
LDLRP01130 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms