Protein–RNA interactions for Protein: Q9Y252

RNF6, E3 ubiquitin-protein ligase RNF6, humanhuman

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF6Q9Y252 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF6Q9Y252 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF6Q9Y252 AL137013.1-201ENST00000432946 1228 ntBASIC17.48■□□□□ 0.39
RNF6Q9Y252 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF6Q9Y252 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.48■□□□□ 0.39
RNF6Q9Y252 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.48■□□□□ 0.39
RNF6Q9Y252 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF6Q9Y252 C1QL1P1-201ENST00000568105 661 ntBASIC17.48■□□□□ 0.39
RNF6Q9Y252 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.48■□□□□ 0.39
RNF6Q9Y252 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF6Q9Y252 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF6Q9Y252 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF6Q9Y252 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF6Q9Y252 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF6Q9Y252 TFP1-202ENST00000475455 1573 ntBASIC17.48■□□□□ 0.39
RNF6Q9Y252 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF6Q9Y252 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF6Q9Y252 AC104417.2-201ENST00000562989 1793 ntBASIC17.48■□□□□ 0.39
RNF6Q9Y252 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF6Q9Y252 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF6Q9Y252 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 ANO7L1-203ENST00000602586 1720 ntBASIC17.47■□□□□ 0.39
RNF6Q9Y252 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 TERF1P1-201ENST00000311003 1181 ntBASIC17.47■□□□□ 0.39
RNF6Q9Y252 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 AC067852.2-201ENST00000590513 2313 ntBASIC17.47■□□□□ 0.39
RNF6Q9Y252 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF6Q9Y252 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.47■□□□□ 0.39
RNF6Q9Y252 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF6Q9Y252 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF6Q9Y252 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF6Q9Y252 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.46■□□□□ 0.39
RNF6Q9Y252 FSCN1P1-201ENST00000568912 1481 ntBASIC17.46■□□□□ 0.39
RNF6Q9Y252 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF6Q9Y252 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF6Q9Y252 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF6Q9Y252 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF6Q9Y252 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.46■□□□□ 0.39
RNF6Q9Y252 SLC25A3P1-201ENST00000443844 931 ntBASIC17.46■□□□□ 0.39
RNF6Q9Y252 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.46■□□□□ 0.39
RNF6Q9Y252 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.46■□□□□ 0.39
RNF6Q9Y252 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.46■□□□□ 0.39
RNF6Q9Y252 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.46■□□□□ 0.39
RNF6Q9Y252 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
RNF6Q9Y252 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.46■□□□□ 0.39
RNF6Q9Y252 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RNF6Q9Y252 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF6Q9Y252 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
RNF6Q9Y252 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
RNF6Q9Y252 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.46■□□□□ 0.39
RNF6Q9Y252 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
RNF6Q9Y252 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
RNF6Q9Y252 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.45■□□□□ 0.38
RNF6Q9Y252 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.45■□□□□ 0.38
RNF6Q9Y252 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
RNF6Q9Y252 ABALON-201ENST00000629058 1903 ntBASIC17.45■□□□□ 0.38
RNF6Q9Y252 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.45■□□□□ 0.38
RNF6Q9Y252 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.45■□□□□ 0.38
RNF6Q9Y252 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.45■□□□□ 0.38
RNF6Q9Y252 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.45■□□□□ 0.38
RNF6Q9Y252 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.45■□□□□ 0.38
RNF6Q9Y252 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.45■□□□□ 0.38
RNF6Q9Y252 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.45■□□□□ 0.38
RNF6Q9Y252 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF6Q9Y252 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms