Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC00643Q86TS7 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 OS9-205ENST00000413095 1660 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 Z92544.1-202ENST00000571933 1220 ntBASIC11.59□□□□□ -0.55
LINC00643Q86TS7 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 KRT8P36-201ENST00000489121 1440 ntBASIC11.59□□□□□ -0.55
LINC00643Q86TS7 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00643Q86TS7 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.55
LINC00643Q86TS7 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
LINC00643Q86TS7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC11.58□□□□□ -0.55
LINC00643Q86TS7 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.55
LINC00643Q86TS7 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 SNX5-217ENST00000606557 1087 ntBASIC11.58□□□□□ -0.56
LINC00643Q86TS7 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 AC083906.6-201ENST00000641366 219 ntBASIC11.58□□□□□ -0.56
LINC00643Q86TS7 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 AC105917.1-201ENST00000506637 2539 ntBASIC11.58□□□□□ -0.56
LINC00643Q86TS7 MIR600HG-201ENST00000449175 5984 ntBASIC11.58□□□□□ -0.56
LINC00643Q86TS7 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC11.58□□□□□ -0.56
LINC00643Q86TS7 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC11.58□□□□□ -0.56
LINC00643Q86TS7 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC11.57□□□□□ -0.56
LINC00643Q86TS7 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms