Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.04■□□□□ 0.32
TIMP4Q99727 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.04■□□□□ 0.32
TIMP4Q99727 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.04■□□□□ 0.32
TIMP4Q99727 LINC01238-205ENST00000567549 1107 ntBASIC17.04■□□□□ 0.32
TIMP4Q99727 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TIMP4Q99727 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.04■□□□□ 0.32
TIMP4Q99727 AC140113.3-201ENST00000605663 199 ntBASIC17.04■□□□□ 0.32
TIMP4Q99727 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TIMP4Q99727 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TIMP4Q99727 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TIMP4Q99727 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TIMP4Q99727 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TIMP4Q99727 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TIMP4Q99727 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
TIMP4Q99727 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TIMP4Q99727 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TIMP4Q99727 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TIMP4Q99727 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TIMP4Q99727 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TIMP4Q99727 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
TIMP4Q99727 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.03■□□□□ 0.32
TIMP4Q99727 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.03■□□□□ 0.32
TIMP4Q99727 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TIMP4Q99727 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.03■□□□□ 0.32
TIMP4Q99727 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
TIMP4Q99727 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TIMP4Q99727 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
TIMP4Q99727 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.03■□□□□ 0.32
TIMP4Q99727 AC008622.2-201ENST00000617006 1229 ntBASIC17.03■□□□□ 0.32
TIMP4Q99727 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.03■□□□□ 0.32
TIMP4Q99727 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TIMP4Q99727 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.02■□□□□ 0.32
TIMP4Q99727 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TIMP4Q99727 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TIMP4Q99727 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
TIMP4Q99727 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TIMP4Q99727 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.02■□□□□ 0.32
TIMP4Q99727 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TIMP4Q99727 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TIMP4Q99727 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TIMP4Q99727 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.02■□□□□ 0.32
TIMP4Q99727 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.02■□□□□ 0.32
TIMP4Q99727 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.02■□□□□ 0.32
TIMP4Q99727 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TIMP4Q99727 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.02■□□□□ 0.32
TIMP4Q99727 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.02■□□□□ 0.32
TIMP4Q99727 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.02■□□□□ 0.32
TIMP4Q99727 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.02■□□□□ 0.32
TIMP4Q99727 AC087388.1-201ENST00000571370 1112 ntBASIC17.02■□□□□ 0.32
TIMP4Q99727 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.02■□□□□ 0.32
TIMP4Q99727 MIR4674-201ENST00000582457 87 ntBASIC17.02■□□□□ 0.32
TIMP4Q99727 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.02■□□□□ 0.32
TIMP4Q99727 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
TIMP4Q99727 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TIMP4Q99727 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
TIMP4Q99727 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
TIMP4Q99727 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
TIMP4Q99727 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
TIMP4Q99727 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
TIMP4Q99727 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TIMP4Q99727 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TIMP4Q99727 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TIMP4Q99727 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TIMP4Q99727 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TIMP4Q99727 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.02■□□□□ 0.31
TIMP4Q99727 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.02■□□□□ 0.31
TIMP4Q99727 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TIMP4Q99727 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.01■□□□□ 0.31
TIMP4Q99727 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.01■□□□□ 0.31
TIMP4Q99727 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TIMP4Q99727 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.01■□□□□ 0.31
TIMP4Q99727 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 FAM8A6P-201ENST00000407496 1135 ntBASIC17.01■□□□□ 0.31
TIMP4Q99727 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.01■□□□□ 0.31
TIMP4Q99727 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.01■□□□□ 0.31
TIMP4Q99727 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
TIMP4Q99727 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.01■□□□□ 0.31
TIMP4Q99727 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TIMP4Q99727 NOC2LP2-201ENST00000407594 1944 ntBASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms