Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM49D1C9J1S8 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM49D1C9J1S8 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM49D1C9J1S8 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
TRIM49D1C9J1S8 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TRIM49D1C9J1S8 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TRIM49D1C9J1S8 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM49D1C9J1S8 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TRIM49D1C9J1S8 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TRIM49D1C9J1S8 ESPNP-201ENST00000270691 2015 ntBASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 KRT8P45-201ENST00000414328 1447 ntBASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 AP003097.1-201ENST00000530657 1135 ntBASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM49D1C9J1S8 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 KRASP1-201ENST00000407852 552 ntBASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 KRT17P3-201ENST00000420566 1262 ntBASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 PRSS44-201ENST00000515154 1146 ntBASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 AL023875.1-201ENST00000640777 796 ntBASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 AC093677.2-201ENST00000600169 1863 ntBASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TRIM49D1C9J1S8 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms