Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.87■□□□□ 0.61
RPA3P35244 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.87■□□□□ 0.61
RPA3P35244 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.87■□□□□ 0.61
RPA3P35244 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.87■□□□□ 0.61
RPA3P35244 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
RPA3P35244 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.87■□□□□ 0.61
RPA3P35244 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.87■□□□□ 0.61
RPA3P35244 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.87■□□□□ 0.61
RPA3P35244 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
RPA3P35244 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPA3P35244 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.86■□□□□ 0.61
RPA3P35244 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
RPA3P35244 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.86■□□□□ 0.61
RPA3P35244 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
RPA3P35244 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.86■□□□□ 0.61
RPA3P35244 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
RPA3P35244 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
RPA3P35244 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
RPA3P35244 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.86■□□□□ 0.61
RPA3P35244 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.86■□□□□ 0.61
RPA3P35244 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.86■□□□□ 0.61
RPA3P35244 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.86■□□□□ 0.61
RPA3P35244 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
RPA3P35244 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.86■□□□□ 0.61
RPA3P35244 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 ESPNP-201ENST00000270691 2015 ntBASIC18.86■□□□□ 0.61
RPA3P35244 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.86■□□□□ 0.61
RPA3P35244 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPA3P35244 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.85■□□□□ 0.61
RPA3P35244 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.85■□□□□ 0.61
RPA3P35244 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
RPA3P35244 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
RPA3P35244 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.85■□□□□ 0.61
RPA3P35244 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.85■□□□□ 0.61
RPA3P35244 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
RPA3P35244 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.85■□□□□ 0.61
RPA3P35244 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.85■□□□□ 0.61
RPA3P35244 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
RPA3P35244 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.85■□□□□ 0.61
RPA3P35244 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.85■□□□□ 0.61
RPA3P35244 AL499627.1-201ENST00000569373 2188 ntBASIC18.85■□□□□ 0.61
RPA3P35244 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.85■□□□□ 0.61
RPA3P35244 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPA3P35244 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
RPA3P35244 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.84■□□□□ 0.61
RPA3P35244 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
RPA3P35244 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.84■□□□□ 0.61
RPA3P35244 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
RPA3P35244 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.84■□□□□ 0.61
RPA3P35244 UBE2SP1-201ENST00000450587 669 ntBASIC18.84■□□□□ 0.61
RPA3P35244 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RPA3P35244 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms