Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
TMX2-CTNND1H3BSU7 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TMX2-CTNND1H3BSU7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TMX2-CTNND1H3BSU7 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TMX2-CTNND1H3BSU7 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
TMX2-CTNND1H3BSU7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 LINC01465-201ENST00000408887 1940 ntBASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 AC005332.1-201ENST00000577698 1310 ntBASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 AC069148.1-201ENST00000608741 768 ntBASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TMX2-CTNND1H3BSU7 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 AC093458.2-201ENST00000623150 629 ntBASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 AP000997.3-201ENST00000623333 2250 ntBASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMX2-CTNND1H3BSU7 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 AC112907.2-201ENST00000448639 330 ntBASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 ZNF444P1-201ENST00000559497 298 ntBASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.27■□□□□ 0.52
TMX2-CTNND1H3BSU7 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
TMX2-CTNND1H3BSU7 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TMX2-CTNND1H3BSU7 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
TMX2-CTNND1H3BSU7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TMX2-CTNND1H3BSU7 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TMX2-CTNND1H3BSU7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TMX2-CTNND1H3BSU7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TMX2-CTNND1H3BSU7 Z82202.1-201ENST00000623446 1880 ntBASIC18.26■□□□□ 0.51
TMX2-CTNND1H3BSU7 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
TMX2-CTNND1H3BSU7 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.26■□□□□ 0.51
TMX2-CTNND1H3BSU7 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TMX2-CTNND1H3BSU7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.26■□□□□ 0.51
TMX2-CTNND1H3BSU7 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TMX2-CTNND1H3BSU7 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms