Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.42■□□□□ 0.38
RFX4Q33E94 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.42■□□□□ 0.38
RFX4Q33E94 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.42■□□□□ 0.38
RFX4Q33E94 AC097658.1-201ENST00000475555 843 ntBASIC17.42■□□□□ 0.38
RFX4Q33E94 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.42■□□□□ 0.38
RFX4Q33E94 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.42■□□□□ 0.38
RFX4Q33E94 MIR4758-201ENST00000577688 71 ntBASIC17.42■□□□□ 0.38
RFX4Q33E94 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
RFX4Q33E94 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.42■□□□□ 0.38
RFX4Q33E94 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.42■□□□□ 0.38
RFX4Q33E94 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
RFX4Q33E94 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.42■□□□□ 0.38
RFX4Q33E94 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RFX4Q33E94 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
RFX4Q33E94 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
RFX4Q33E94 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 LINC00896-202ENST00000609602 2128 ntBASIC17.41■□□□□ 0.38
RFX4Q33E94 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
RFX4Q33E94 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 GUSBP6-202ENST00000438529 1198 ntBASIC17.41■□□□□ 0.38
RFX4Q33E94 TSPY6P-201ENST00000448518 926 ntBASIC17.41■□□□□ 0.38
RFX4Q33E94 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.41■□□□□ 0.38
RFX4Q33E94 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.41■□□□□ 0.38
RFX4Q33E94 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.41■□□□□ 0.38
RFX4Q33E94 MYC-209ENST00000641252 345 ntBASIC17.41■□□□□ 0.38
RFX4Q33E94 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
RFX4Q33E94 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.41■□□□□ 0.38
RFX4Q33E94 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
RFX4Q33E94 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
RFX4Q33E94 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
RFX4Q33E94 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
RFX4Q33E94 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RFX4Q33E94 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX4Q33E94 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX4Q33E94 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.4■□□□□ 0.38
RFX4Q33E94 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX4Q33E94 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX4Q33E94 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RFX4Q33E94 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX4Q33E94 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX4Q33E94 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.4■□□□□ 0.38
RFX4Q33E94 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX4Q33E94 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
RFX4Q33E94 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.4■□□□□ 0.38
RFX4Q33E94 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.4■□□□□ 0.38
RFX4Q33E94 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX4Q33E94 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX4Q33E94 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
RFX4Q33E94 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX4Q33E94 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX4Q33E94 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
RFX4Q33E94 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.4■□□□□ 0.38
RFX4Q33E94 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
RFX4Q33E94 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX4Q33E94 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX4Q33E94 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX4Q33E94 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX4Q33E94 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
RFX4Q33E94 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX4Q33E94 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX4Q33E94 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.4■□□□□ 0.38
RFX4Q33E94 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.39■□□□□ 0.37
RFX4Q33E94 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms