Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HIF3AQ9Y2N7 AC073592.3-201ENST00000625118 1834 ntBASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 AC020763.4-201ENST00000623414 4170 ntBASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 AC079598.2-202ENST00000546624 1451 ntBASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 AC135050.7-201ENST00000624508 2218 ntBASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 AC008040.2-201ENST00000461049 708 ntBASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 FAM197Y4-202ENST00000622692 608 ntBASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.93■□□□□ 0.3
HIF3AQ9Y2N7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 FAM207BP-201ENST00000447172 505 ntBASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 B3GAT3P1-201ENST00000471720 806 ntBASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HIF3AQ9Y2N7 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 BICD1-207ENST00000551848 1962 ntBASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 AL135905.2-201ENST00000584934 1404 ntBASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 KRT18P29-201ENST00000397031 1267 ntBASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 AC011506.1-201ENST00000474329 610 ntBASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 MIR6786-201ENST00000616843 113 ntBASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HIF3AQ9Y2N7 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms