Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 HIP1-204ENST00000434438 7066 ntTSL 2 BASIC9.92□□□□□ -0.824e-6■■■□□ 17.7
UPF1Q92900 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC7.96□□□□□ -1.134e-13■■■□□ 17.7
UPF1Q92900 ZNF263-206ENST00000574674 691 ntTSL 28.51□□□□□ -1.052e-6■■■□□ 17.6
UPF1Q92900 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.221e-26■■■□□ 17.6
UPF1Q92900 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.041e-26■■■□□ 17.6
UPF1Q92900 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC31.44■■■□□ 2.622e-8■■■□□ 17.6
UPF1Q92900 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.112e-8■■■□□ 17.6
UPF1Q92900 DUSP22-211ENST00000604971 3824 ntTSL 2 BASIC11.95□□□□□ -0.52e-8■■■□□ 17.6
UPF1Q92900 ST3GAL1-211ENST00000522652 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.283e-6■■■□□ 17.6
UPF1Q92900 ENO1-202ENST00000464920 2266 ntTSL 1 (best)15.2■□□□□ 0.026e-58■■■□□ 17.6
UPF1Q92900 ENO1-201ENST00000234590 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.276e-58■■■□□ 17.6
UPF1Q92900 CDIPT-203ENST00000562041 1129 ntTSL 334.76■■■■□ 3.162e-13■■■□□ 17.6
UPF1Q92900 TSPAN31-209ENST00000549052 1100 ntTSL 319.14■□□□□ 0.651e-7■■■□□ 17.6
UPF1Q92900 GNA12-202ENST00000407653 3785 ntTSL 2 BASIC11.42□□□□□ -0.582e-7■■■□□ 17.6
UPF1Q92900 GNA12-207ENST00000491117 3375 ntTSL 310.74□□□□□ -0.692e-7■■■□□ 17.6
UPF1Q92900 GNA12-203ENST00000407904 3918 ntTSL 2 BASIC9.54□□□□□ -0.882e-7■■■□□ 17.6
UPF1Q92900 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.149e-8■■■□□ 17.6
UPF1Q92900 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.239e-8■■■□□ 17.6
UPF1Q92900 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.299e-8■■■□□ 17.6
UPF1Q92900 POM121-204ENST00000446813 3456 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.789e-8■■■□□ 17.6
UPF1Q92900 GFPT1-201ENST00000357308 8703 ntTSL 5 BASIC8.18□□□□□ -1.12e-8■■■□□ 17.6
UPF1Q92900 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.292e-8■■■□□ 17.6
UPF1Q92900 FKBP14-201ENST00000222803 4960 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.965e-6■■■□□ 17.6
UPF1Q92900 ZFYVE27-210ENST00000477521 743 ntTSL 219.07■□□□□ 0.647e-8■■■□□ 17.6
UPF1Q92900 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.945e-6■■■□□ 17.6
UPF1Q92900 TTC7A-204ENST00000409825 4739 ntTSL 1 (best)16.39■□□□□ 0.215e-6■■■□□ 17.6
UPF1Q92900 TTC7A-209ENST00000484061 3085 ntTSL 1 (best)15.53■□□□□ 0.085e-6■■■□□ 17.6
UPF1Q92900 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.4□□□□□ -0.15e-6■■■□□ 17.6
UPF1Q92900 TTC7A-211ENST00000491786 3615 ntTSL 1 (best)11.75□□□□□ -0.535e-6■■■□□ 17.6
UPF1Q92900 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.482e-6■■■□□ 17.6
UPF1Q92900 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.122e-6■■■□□ 17.6
UPF1Q92900 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC28.18■■■□□ 2.12e-6■■■□□ 17.6
UPF1Q92900 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.372e-6■■■□□ 17.6
UPF1Q92900 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.322e-6■■■□□ 17.6
UPF1Q92900 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.196e-8■■■□□ 17.6
UPF1Q92900 KCNN4-203ENST00000598836 1003 ntTSL 528.1■■■□□ 2.092e-6■■■□□ 17.6
UPF1Q92900 KCNN4-207ENST00000600909 1190 ntTSL 326.3■■□□□ 1.82e-6■■■□□ 17.6
UPF1Q92900 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.12e-6■■■□□ 17.6
UPF1Q92900 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.49■□□□□ 0.872e-6■■■□□ 17.6
UPF1Q92900 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.47□□□□□ -0.098e-10■■■□□ 17.6
UPF1Q92900 CELF1-207ENST00000524648 393 ntTSL 213.52□□□□□ -0.258e-10■■■□□ 17.6
UPF1Q92900 CELF1-220ENST00000539455 800 ntTSL 59.24□□□□□ -0.938e-10■■■□□ 17.6
UPF1Q92900 CELF1-215ENST00000532048 3044 ntTSL 1 (best) BASIC8.46□□□□□ -1.068e-10■■■□□ 17.6
UPF1Q92900 MAP7D1-202ENST00000373148 1797 ntTSL 234.97■■■■□ 3.191e-11■■■□□ 17.6
UPF1Q92900 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.49■□□□□ 0.719e-7■■■□□ 17.6
UPF1Q92900 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.71e-11■■■□□ 17.6
UPF1Q92900 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.329e-7■■■□□ 17.6
UPF1Q92900 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.271e-11■■■□□ 17.6
UPF1Q92900 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.261e-11■■■□□ 17.6
UPF1Q92900 ZNF74-208ENST00000493734 3758 ntTSL 215.15■□□□□ 0.029e-7■■■□□ 17.6
UPF1Q92900 ZNF74-206ENST00000437275 3744 ntTSL 1 (best)15.01□□□□□ -0.019e-7■■■□□ 17.6
UPF1Q92900 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.089e-7■■■□□ 17.6
UPF1Q92900 DSCR3-203ENST00000399000 4398 ntTSL 1 (best)14.25□□□□□ -0.135e-7■■■□□ 17.6
UPF1Q92900 DSCR3-201ENST00000309117 3256 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.535e-7■■■□□ 17.6
UPF1Q92900 DSCR3-212ENST00000497493 5648 ntTSL 210.47□□□□□ -0.735e-7■■■□□ 17.6
UPF1Q92900 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.393e-6■■■□□ 17.6
UPF1Q92900 RAB17-203ENST00000409576 466 ntTSL 3 BASIC24.33■■□□□ 1.496e-7■■■□□ 17.5
UPF1Q92900 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.826e-7■■■□□ 17.5
UPF1Q92900 RAB17-206ENST00000414278 1511 ntTSL 220.07■□□□□ 0.86e-7■■■□□ 17.5
UPF1Q92900 RAB17-202ENST00000392001 1792 ntTSL 1 (best)19.69■□□□□ 0.746e-7■■■□□ 17.5
UPF1Q92900 RAB17-210ENST00000477149 3211 ntTSL 1 (best)13.41□□□□□ -0.266e-7■■■□□ 17.5
UPF1Q92900 COA7-201ENST00000371538 4005 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.731e-6■■■□□ 17.5
UPF1Q92900 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.47■□□□□ 0.072e-8■■■□□ 17.5
UPF1Q92900 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.214e-8■■■□□ 17.5
UPF1Q92900 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC29.05■■■□□ 2.245e-9■■■□□ 17.5
UPF1Q92900 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC24.11■■□□□ 1.452e-8■■■□□ 17.5
UPF1Q92900 RDH13-221ENST00000592573 1481 ntTSL 223.31■■□□□ 1.322e-8■■■□□ 17.5
UPF1Q92900 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.232e-8■■■□□ 17.5
UPF1Q92900 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC21.46■■□□□ 1.032e-8■■■□□ 17.5
UPF1Q92900 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.5■□□□□ 0.712e-8■■■□□ 17.5
UPF1Q92900 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.26■□□□□ 0.672e-8■■■□□ 17.5
UPF1Q92900 RDH13-219ENST00000591960 1328 ntTSL 518.99■□□□□ 0.632e-8■■■□□ 17.5
UPF1Q92900 TYSND1-203ENST00000479086 2620 ntTSL 216.89■□□□□ 0.292e-8■■■□□ 17.5
UPF1Q92900 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.63■□□□□ 0.252e-8■■■□□ 17.5
UPF1Q92900 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.232e-8■■■□□ 17.5
UPF1Q92900 RDH13-201ENST00000291892 3022 ntTSL 212.86□□□□□ -0.352e-8■■■□□ 17.5
UPF1Q92900 TYSND1-204ENST00000494143 3341 ntTSL 212.66□□□□□ -0.382e-8■■■□□ 17.5
UPF1Q92900 RDH13-218ENST00000591868 143 ntTSL 511.91□□□□□ -0.52e-8■■■□□ 17.5
UPF1Q92900 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.32e-8■■■□□ 17.5
UPF1Q92900 PFKFB2-207ENST00000483688 554 ntTSL 310.75□□□□□ -0.697e-7■■■□□ 17.5
UPF1Q92900 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC31.29■■■□□ 2.66e-21■■■□□ 17.5
UPF1Q92900 AES-210ENST00000590067 1100 ntTSL 226.48■■□□□ 1.836e-21■■■□□ 17.5
UPF1Q92900 AES-211ENST00000592330 275 ntTSL 57.97□□□□□ -1.136e-21■■■□□ 17.5
UPF1Q92900 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.914e-8■■■□□ 17.5
UPF1Q92900 PLCXD1-203ENST00000399012 5287 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.424e-8■■■□□ 17.5
UPF1Q92900 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.464e-8■■■□□ 17.5
UPF1Q92900 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC25.01■■□□□ 1.592e-9■■■□□ 17.5
UPF1Q92900 OGFOD2-213ENST00000540324 1828 ntTSL 1 (best)22.49■■□□□ 1.192e-9■■■□□ 17.5
UPF1Q92900 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.3■■□□□ 12e-9■■■□□ 17.5
UPF1Q92900 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 12e-9■■■□□ 17.5
UPF1Q92900 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.05■□□□□ 0.962e-9■■■□□ 17.5
UPF1Q92900 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.49■□□□□ 0.712e-9■■■□□ 17.5
UPF1Q92900 OGFOD2-203ENST00000406539 2274 ntTSL 217.71■□□□□ 0.432e-9■■■□□ 17.5
UPF1Q92900 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.57■□□□□ 0.42e-9■■■□□ 17.5
UPF1Q92900 TMEM201-204ENST00000508400 893 ntTSL 516.43■□□□□ 0.222e-9■■■□□ 17.5
UPF1Q92900 SLC1A2-205ENST00000464522 607 ntTSL 310.63□□□□□ -0.712e-7■■■□□ 17.5
UPF1Q92900 CTNND1-215ENST00000526938 3489 ntTSL 5 BASIC9.19□□□□□ -0.942e-9■■■□□ 17.5
UPF1Q92900 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.082e-7■■■□□ 17.5
UPF1Q92900 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.362e-7■■■□□ 17.5
UPF1Q92900 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.79□□□□□ -1.482e-7■■■□□ 17.5
Retrieved 100 of 15,879 protein–RNA pairs in 165.4 ms