Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC24.45■■□□□ 1.5
RTF1Q92541 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 COPS8-203ENST00000409334 794 ntTSL 5 BASIC24.45■■□□□ 1.5
RTF1Q92541 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC24.45■■□□□ 1.5
RTF1Q92541 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 AC092597.1-201ENST00000487352 616 ntBASIC24.45■■□□□ 1.5
RTF1Q92541 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC24.45■■□□□ 1.5
RTF1Q92541 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC24.45■■□□□ 1.5
RTF1Q92541 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC24.45■■□□□ 1.5
RTF1Q92541 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC24.45■■□□□ 1.5
RTF1Q92541 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC24.45■■□□□ 1.5
RTF1Q92541 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
RTF1Q92541 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC24.44■■□□□ 1.5
RTF1Q92541 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC24.44■■□□□ 1.5
RTF1Q92541 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
RTF1Q92541 HOXB1-202ENST00000577092 1414 ntBASIC24.44■■□□□ 1.5
RTF1Q92541 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
RTF1Q92541 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 AC034236.2-201ENST00000606662 1610 ntBASIC24.44■■□□□ 1.5
RTF1Q92541 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 HBZP1-201ENST00000354915 429 ntBASIC24.44■■□□□ 1.5
RTF1Q92541 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC24.44■■□□□ 1.5
RTF1Q92541 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 AL161938.1-201ENST00000569833 2180 ntBASIC24.44■■□□□ 1.5
RTF1Q92541 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC24.44■■□□□ 1.5
RTF1Q92541 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
RTF1Q92541 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC24.43■■□□□ 1.5
RTF1Q92541 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC24.43■■□□□ 1.5
RTF1Q92541 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC24.43■■□□□ 1.5
RTF1Q92541 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC24.43■■□□□ 1.5
RTF1Q92541 CBFB-203ENST00000561924 584 ntTSL 5 BASIC24.43■■□□□ 1.5
RTF1Q92541 MIR3917-201ENST00000580971 93 ntBASIC24.43■■□□□ 1.5
RTF1Q92541 AC116407.4-201ENST00000623319 1061 ntBASIC24.43■■□□□ 1.5
RTF1Q92541 AL157888.1-201ENST00000631930 593 ntBASIC24.43■■□□□ 1.5
RTF1Q92541 CLN6-214ENST00000636314 442 ntTSL 3 BASIC24.43■■□□□ 1.5
RTF1Q92541 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC24.43■■□□□ 1.5
RTF1Q92541 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RTF1Q92541 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC24.43■■□□□ 1.5
RTF1Q92541 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 AC116562.4-201ENST00000641316 2276 ntBASIC24.42■■□□□ 1.5
RTF1Q92541 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
RTF1Q92541 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC24.42■■□□□ 1.5
RTF1Q92541 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC24.42■■□□□ 1.5
RTF1Q92541 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
RTF1Q92541 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 BET1L-202ENST00000332865 533 ntTSL 5 BASIC24.42■■□□□ 1.5
RTF1Q92541 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC24.42■■□□□ 1.5
RTF1Q92541 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC24.42■■□□□ 1.5
RTF1Q92541 PTK2-216ENST00000519881 863 ntTSL 3 BASIC24.42■■□□□ 1.5
RTF1Q92541 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC24.42■■□□□ 1.5
RTF1Q92541 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
RTF1Q92541 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
RTF1Q92541 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
RTF1Q92541 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
RTF1Q92541 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RTF1Q92541 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RTF1Q92541 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RTF1Q92541 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC24.41■■□□□ 1.5
RTF1Q92541 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RTF1Q92541 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms