Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PRTG-204ENST00000561292 833 ntTSL 3 BASIC26.51■■□□□ 1.84
TTC28Q96AY4 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC26.51■■□□□ 1.83
TTC28Q96AY4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
TTC28Q96AY4 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
TTC28Q96AY4 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
TTC28Q96AY4 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
TTC28Q96AY4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.5■■□□□ 1.83
TTC28Q96AY4 RAP2CP1-202ENST00000605179 643 ntBASIC26.5■■□□□ 1.83
TTC28Q96AY4 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC26.49■■□□□ 1.83
TTC28Q96AY4 MED25-210ENST00000612854 801 ntTSL 5 BASIC26.49■■□□□ 1.83
TTC28Q96AY4 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
TTC28Q96AY4 MED25-214ENST00000622402 642 ntTSL 5 BASIC26.49■■□□□ 1.83
TTC28Q96AY4 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.49■■□□□ 1.83
TTC28Q96AY4 AC239859.2-201ENST00000444165 318 ntBASIC26.49■■□□□ 1.83
TTC28Q96AY4 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
TTC28Q96AY4 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
TTC28Q96AY4 PVT1_1.1-201ENST00000615125 194 ntBASIC26.48■■□□□ 1.83
TTC28Q96AY4 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
TTC28Q96AY4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
TTC28Q96AY4 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
TTC28Q96AY4 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC26.48■■□□□ 1.83
TTC28Q96AY4 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
TTC28Q96AY4 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26.47■■□□□ 1.83
TTC28Q96AY4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.47■■□□□ 1.83
TTC28Q96AY4 AC139795.1-202ENST00000500444 432 ntBASIC26.47■■□□□ 1.83
TTC28Q96AY4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
TTC28Q96AY4 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC26.46■■□□□ 1.83
TTC28Q96AY4 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.46■■□□□ 1.83
TTC28Q96AY4 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
TTC28Q96AY4 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
TTC28Q96AY4 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC26.46■■□□□ 1.83
TTC28Q96AY4 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
TTC28Q96AY4 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
TTC28Q96AY4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
TTC28Q96AY4 AL031848.2-201ENST00000607670 837 ntBASIC26.43■■□□□ 1.82
TTC28Q96AY4 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.43■■□□□ 1.82
TTC28Q96AY4 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
TTC28Q96AY4 Z92544.1-202ENST00000571933 1220 ntBASIC26.43■■□□□ 1.82
TTC28Q96AY4 AL139246.5-201ENST00000606645 996 ntBASIC26.43■■□□□ 1.82
TTC28Q96AY4 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
TTC28Q96AY4 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
TTC28Q96AY4 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC26.42■■□□□ 1.82
TTC28Q96AY4 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
TTC28Q96AY4 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
TTC28Q96AY4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
TTC28Q96AY4 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
TTC28Q96AY4 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.41■■□□□ 1.82
TTC28Q96AY4 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
TTC28Q96AY4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
TTC28Q96AY4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.38■■□□□ 1.81
TTC28Q96AY4 AC026271.2-201ENST00000428091 497 ntBASIC26.38■■□□□ 1.81
TTC28Q96AY4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
TTC28Q96AY4 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TTC28Q96AY4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.37■■□□□ 1.81
TTC28Q96AY4 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
TTC28Q96AY4 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TTC28Q96AY4 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TTC28Q96AY4 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
TTC28Q96AY4 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC26.36■■□□□ 1.81
TTC28Q96AY4 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC26.36■■□□□ 1.81
TTC28Q96AY4 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
TTC28Q96AY4 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
TTC28Q96AY4 AC110285.7-201ENST00000624417 1536 ntBASIC26.35■■□□□ 1.81
TTC28Q96AY4 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
TTC28Q96AY4 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
TTC28Q96AY4 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
TTC28Q96AY4 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
TTC28Q96AY4 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
TTC28Q96AY4 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.33■■□□□ 1.81
TTC28Q96AY4 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC26.33■■□□□ 1.81
TTC28Q96AY4 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC26.33■■□□□ 1.81
TTC28Q96AY4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
TTC28Q96AY4 AC126177.7-201ENST00000547904 679 ntBASIC26.33■■□□□ 1.81
TTC28Q96AY4 WHAMMP2-203ENST00000563942 1603 ntBASIC26.33■■□□□ 1.81
TTC28Q96AY4 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
TTC28Q96AY4 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.8
TTC28Q96AY4 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.32■■□□□ 1.8
TTC28Q96AY4 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TTC28Q96AY4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.32■■□□□ 1.8
TTC28Q96AY4 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TTC28Q96AY4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.31■■□□□ 1.8
TTC28Q96AY4 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC26.31■■□□□ 1.8
TTC28Q96AY4 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC26.31■■□□□ 1.8
TTC28Q96AY4 GRAMD4P7-201ENST00000578182 1232 ntBASIC26.31■■□□□ 1.8
TTC28Q96AY4 AC104564.3-201ENST00000582367 638 ntBASIC26.31■■□□□ 1.8
TTC28Q96AY4 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
TTC28Q96AY4 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
TTC28Q96AY4 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TTC28Q96AY4 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
TTC28Q96AY4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.29■■□□□ 1.8
TTC28Q96AY4 AC005837.3-201ENST00000612163 286 ntBASIC26.29■■□□□ 1.8
TTC28Q96AY4 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC26.29■■□□□ 1.8
TTC28Q96AY4 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
TTC28Q96AY4 RARRES2P6-201ENST00000567333 442 ntBASIC26.28■■□□□ 1.8
TTC28Q96AY4 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.28■■□□□ 1.8
TTC28Q96AY4 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
TTC28Q96AY4 AC110285.6-201ENST00000617652 491 ntBASIC26.28■■□□□ 1.8
TTC28Q96AY4 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
TTC28Q96AY4 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
TTC28Q96AY4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms