Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC29.51■■■□□ 2.31
HMGCS2P54868 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
HMGCS2P54868 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC29.51■■■□□ 2.31
HMGCS2P54868 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
HMGCS2P54868 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
HMGCS2P54868 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC29.5■■■□□ 2.31
HMGCS2P54868 ATP5G2P3-201ENST00000429083 425 ntBASIC29.5■■■□□ 2.31
HMGCS2P54868 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
HMGCS2P54868 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
HMGCS2P54868 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC29.49■■■□□ 2.31
HMGCS2P54868 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC29.49■■■□□ 2.31
HMGCS2P54868 AC100797.4-201ENST00000631653 1827 ntBASIC29.49■■■□□ 2.31
HMGCS2P54868 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
HMGCS2P54868 AP004833.2-201ENST00000532228 1454 ntBASIC29.48■■■□□ 2.31
HMGCS2P54868 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
HMGCS2P54868 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
HMGCS2P54868 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC29.47■■■□□ 2.31
HMGCS2P54868 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC29.47■■■□□ 2.31
HMGCS2P54868 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC29.47■■■□□ 2.31
HMGCS2P54868 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
HMGCS2P54868 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
HMGCS2P54868 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
HMGCS2P54868 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC29.46■■■□□ 2.31
HMGCS2P54868 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
HMGCS2P54868 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
HMGCS2P54868 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
HMGCS2P54868 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
HMGCS2P54868 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC29.44■■■□□ 2.3
HMGCS2P54868 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
HMGCS2P54868 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC29.44■■■□□ 2.3
HMGCS2P54868 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC29.43■■■□□ 2.3
HMGCS2P54868 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC29.43■■■□□ 2.3
HMGCS2P54868 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
HMGCS2P54868 GUK1-208ENST00000366728 842 ntTSL 2 BASIC29.43■■■□□ 2.3
HMGCS2P54868 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
HMGCS2P54868 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC29.42■■■□□ 2.3
HMGCS2P54868 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
HMGCS2P54868 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
HMGCS2P54868 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.41■■■□□ 2.3
HMGCS2P54868 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
HMGCS2P54868 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
HMGCS2P54868 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
HMGCS2P54868 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC29.4■■■□□ 2.3
HMGCS2P54868 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC29.4■■■□□ 2.3
HMGCS2P54868 AC007029.1-201ENST00000604183 313 ntBASIC29.4■■■□□ 2.3
HMGCS2P54868 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC29.4■■■□□ 2.3
HMGCS2P54868 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC29.39■■■□□ 2.3
HMGCS2P54868 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.3
HMGCS2P54868 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
HMGCS2P54868 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.3
HMGCS2P54868 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
HMGCS2P54868 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC29.38■■■□□ 2.29
HMGCS2P54868 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
HMGCS2P54868 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
HMGCS2P54868 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC29.37■■■□□ 2.29
HMGCS2P54868 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
HMGCS2P54868 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
HMGCS2P54868 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
HMGCS2P54868 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
HMGCS2P54868 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC29.36■■■□□ 2.29
HMGCS2P54868 REST-210ENST00000638187 1334 ntTSL 5 BASIC29.35■■■□□ 2.29
HMGCS2P54868 AL359258.2-201ENST00000564063 1566 ntBASIC29.35■■■□□ 2.29
HMGCS2P54868 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC29.34■■■□□ 2.29
HMGCS2P54868 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
HMGCS2P54868 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC29.34■■■□□ 2.29
HMGCS2P54868 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.33■■■□□ 2.29
HMGCS2P54868 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC29.33■■■□□ 2.29
HMGCS2P54868 AC129492.7-201ENST00000622992 756 ntBASIC29.33■■■□□ 2.29
HMGCS2P54868 AC009831.1-201ENST00000580420 1582 ntBASIC29.33■■■□□ 2.29
HMGCS2P54868 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC29.33■■■□□ 2.29
HMGCS2P54868 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
HMGCS2P54868 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
HMGCS2P54868 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC29.32■■■□□ 2.28
HMGCS2P54868 RARRES2P1-201ENST00000474487 481 ntBASIC29.32■■■□□ 2.28
HMGCS2P54868 AC133552.2-201ENST00000619106 1032 ntBASIC29.32■■■□□ 2.28
HMGCS2P54868 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
HMGCS2P54868 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
HMGCS2P54868 AL592293.1-201ENST00000502889 1188 ntBASIC29.31■■■□□ 2.28
HMGCS2P54868 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC29.31■■■□□ 2.28
HMGCS2P54868 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
HMGCS2P54868 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
HMGCS2P54868 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
HMGCS2P54868 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
HMGCS2P54868 SMPD5-203ENST00000639008 1464 ntBASIC29.29■■■□□ 2.28
HMGCS2P54868 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
HMGCS2P54868 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC29.28■■■□□ 2.28
HMGCS2P54868 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
HMGCS2P54868 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC29.28■■■□□ 2.28
HMGCS2P54868 DUX4L18-201ENST00000553347 1267 ntBASIC29.28■■■□□ 2.28
HMGCS2P54868 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC29.28■■■□□ 2.28
HMGCS2P54868 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC29.28■■■□□ 2.28
HMGCS2P54868 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
HMGCS2P54868 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
HMGCS2P54868 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
HMGCS2P54868 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC29.27■■■□□ 2.28
HMGCS2P54868 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
HMGCS2P54868 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC29.26■■■□□ 2.27
HMGCS2P54868 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC29.26■■■□□ 2.27
HMGCS2P54868 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC29.26■■■□□ 2.27
HMGCS2P54868 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms