Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC21.52■■□□□ 1.04
XRCC3O43542 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
XRCC3O43542 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
XRCC3O43542 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
XRCC3O43542 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC21.51■■□□□ 1.03
XRCC3O43542 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
XRCC3O43542 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
XRCC3O43542 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
XRCC3O43542 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
XRCC3O43542 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.49■■□□□ 1.03
XRCC3O43542 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
XRCC3O43542 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.49■■□□□ 1.03
XRCC3O43542 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
XRCC3O43542 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.49■■□□□ 1.03
XRCC3O43542 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
XRCC3O43542 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.48■■□□□ 1.03
XRCC3O43542 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
XRCC3O43542 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
XRCC3O43542 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.48■■□□□ 1.03
XRCC3O43542 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.48■■□□□ 1.03
XRCC3O43542 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
XRCC3O43542 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
XRCC3O43542 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
XRCC3O43542 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
XRCC3O43542 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
XRCC3O43542 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
XRCC3O43542 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
XRCC3O43542 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
XRCC3O43542 DUSP8P4-201ENST00000399538 1761 ntBASIC21.46■■□□□ 1.03
XRCC3O43542 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.46■■□□□ 1.03
XRCC3O43542 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.46■■□□□ 1.03
XRCC3O43542 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC3O43542 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC3O43542 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
XRCC3O43542 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC3O43542 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC3O43542 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
XRCC3O43542 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.45■■□□□ 1.03
XRCC3O43542 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.45■■□□□ 1.02
XRCC3O43542 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.45■■□□□ 1.02
XRCC3O43542 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
XRCC3O43542 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
XRCC3O43542 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.44■■□□□ 1.02
XRCC3O43542 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
XRCC3O43542 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
XRCC3O43542 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
XRCC3O43542 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
XRCC3O43542 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
XRCC3O43542 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
XRCC3O43542 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
XRCC3O43542 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
XRCC3O43542 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
XRCC3O43542 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.42■■□□□ 1.02
XRCC3O43542 AC092803.2-201ENST00000564287 1899 ntBASIC21.42■■□□□ 1.02
XRCC3O43542 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.41■■□□□ 1.02
XRCC3O43542 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
XRCC3O43542 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
XRCC3O43542 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
XRCC3O43542 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
XRCC3O43542 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
XRCC3O43542 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC21.4■■□□□ 1.02
XRCC3O43542 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
XRCC3O43542 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.4■■□□□ 1.02
XRCC3O43542 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
XRCC3O43542 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.02
XRCC3O43542 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.39■■□□□ 1.01
XRCC3O43542 AC093323.1-202ENST00000635031 2045 ntBASIC21.39■■□□□ 1.01
XRCC3O43542 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
XRCC3O43542 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.38■■□□□ 1.01
XRCC3O43542 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
XRCC3O43542 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
XRCC3O43542 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.37■■□□□ 1.01
XRCC3O43542 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
XRCC3O43542 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.37■■□□□ 1.01
XRCC3O43542 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
XRCC3O43542 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
XRCC3O43542 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.36■■□□□ 1.01
XRCC3O43542 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
XRCC3O43542 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
XRCC3O43542 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
XRCC3O43542 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
XRCC3O43542 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.35■■□□□ 1.01
XRCC3O43542 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
XRCC3O43542 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
XRCC3O43542 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
XRCC3O43542 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
XRCC3O43542 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC21.34■■□□□ 1.01
XRCC3O43542 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
XRCC3O43542 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.34■■□□□ 1.01
XRCC3O43542 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.34■■□□□ 1.01
XRCC3O43542 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
XRCC3O43542 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.33■■□□□ 1.01
XRCC3O43542 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
XRCC3O43542 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
XRCC3O43542 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.33■■□□□ 1
XRCC3O43542 AC135983.2-203ENST00000454486 1613 ntBASIC21.33■■□□□ 1
XRCC3O43542 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
XRCC3O43542 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
XRCC3O43542 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
XRCC3O43542 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms