RNA–Protein interactions for RNA: YOR106W

VAM3, Transcript of Syntaxin-like vacuolar t-SNARE, yeastyeast

Gene VAM3, Length 852 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM3YOR106W MTC1P47018 478 aaKnown RBP17.97■□□□□ 0.47
VAM3YOR106W DRS1P32892 752 aaKnown RBP17.5■□□□□ 0.39
VAM3YOR106W FAP1P53971 965 aa15.49■□□□□ 0.07
VAM3YOR106W DIP2Q12220 943 aaPredicted RBP15.08■□□□□ 0
VAM3YOR106W BFR2Q06631 534 aaKnown RBP14.88□□□□□ -0.03
VAM3YOR106W ISW2Q08773 1120 aa14.81□□□□□ -0.04
VAM3YOR106W PRI1P10363 409 aa14.76□□□□□ -0.05
VAM3YOR106W AVT3P36062 692 aa14.68□□□□□ -0.06
VAM3YOR106W AAD16Q02895 342 aa14.61□□□□□ -0.07
VAM3YOR106W RPG1P38249 964 aaKnown RBP14.59□□□□□ -0.07
VAM3YOR106W PRY3P47033 881 aa14.5□□□□□ -0.09
VAM3YOR106W RSE1Q04693 1361 aaKnown RBP14.41□□□□□ -0.1
VAM3YOR106W TSR3Q12094 313 aaKnown RBP14□□□□□ -0.17
VAM3YOR106W RPL17AP05740 184 aaKnown RBP13.9□□□□□ -0.18
VAM3YOR106W RPL17BP46990 184 aaKnown RBP13.9□□□□□ -0.18
VAM3YOR106W REB1P21538 810 aa13.82□□□□□ -0.2
VAM3YOR106W HAA1Q12753 694 aaKnown RBP13.64□□□□□ -0.23
VAM3YOR106W YCK3P39962 524 aa13.56□□□□□ -0.24
VAM3YOR106W TFA1P36100 482 aa13.54□□□□□ -0.24
VAM3YOR106W MRPL32P25348 183 aa13.5□□□□□ -0.25
VAM3YOR106W SPT21P35209 758 aa13.29□□□□□ -0.28
VAM3YOR106W YKR023WP36119 530 aaKnown RBP12.99□□□□□ -0.33
VAM3YOR106W RIM101P33400 625 aa12.98□□□□□ -0.33
VAM3YOR106W CDC27P38042 758 aa12.86□□□□□ -0.35
VAM3YOR106W HOP09932 586 aa12.76□□□□□ -0.37
VAM3YOR106W TFC8Q12308 588 aa12.75□□□□□ -0.37
VAM3YOR106W YGL015CP33199 130 aa12.74□□□□□ -0.37
VAM3YOR106W DCD1P06773 312 aa12.67□□□□□ -0.38
VAM3YOR106W OXP1P28273 1286 aa12.54□□□□□ -0.4
VAM3YOR106W YIL055CP40523 627 aaKnown RBP12.48□□□□□ -0.41
VAM3YOR106W UBP10P53874 792 aaPredicted RBP12.47□□□□□ -0.41
VAM3YOR106W PTP3P40048 928 aa12.44□□□□□ -0.42
VAM3YOR106W MAP2P38174 421 aaKnown RBP12.41□□□□□ -0.42
VAM3YOR106W YAH1Q12184 172 aaKnown RBP12.36□□□□□ -0.43
VAM3YOR106W BCH2P36122 765 aa12.35□□□□□ -0.43
VAM3YOR106W SCY1P53009 804 aa12.31□□□□□ -0.44
VAM3YOR106W RSM7P47150 247 aa12.23□□□□□ -0.45
VAM3YOR106W SSP1P38871 571 aa12.18□□□□□ -0.46
VAM3YOR106W SLX5P32828 619 aaKnown RBP12.13□□□□□ -0.47
VAM3YOR106W EPS1P40557 701 aa12.12□□□□□ -0.47
VAM3YOR106W YLR271WQ06152 274 aa12.12□□□□□ -0.47
VAM3YOR106W ARP8Q12386 881 aaKnown RBP RIP-Chip data12.1□□□□□ -0.47not detected
VAM3YOR106W BBC1P47068 1157 aa12.09□□□□□ -0.47
VAM3YOR106W AI2P03876 854 aa12.07□□□□□ -0.48
VAM3YOR106W BDF1P35817 686 aa12.04□□□□□ -0.48
VAM3YOR106W TIF4632P39936 914 aaKnown RBP12□□□□□ -0.49
VAM3YOR106W TGL3P40308 642 aa11.88□□□□□ -0.51
VAM3YOR106W PSD2P53037 1138 aaKnown RBP11.87□□□□□ -0.51
VAM3YOR106W MGA2P40578 1113 aa11.82□□□□□ -0.52
VAM3YOR106W CST9Q06032 482 aa11.73□□□□□ -0.53
VAM3YOR106W MRM1P25270 412 aa11.68□□□□□ -0.54
VAM3YOR106W NSR1P27476 414 aaKnown RBP RIP-Chip data11.55□□□□□ -0.56not detected
VAM3YOR106W YAP5P40574 245 aa11.52□□□□□ -0.57
VAM3YOR106W YOR238WQ08634 303 aa11.49□□□□□ -0.57
VAM3YOR106W RTG3P38165 486 aa11.48□□□□□ -0.57
VAM3YOR106W MST1P07236 462 aa11.41□□□□□ -0.58
VAM3YOR106W RCR1P38212 213 aa11.38□□□□□ -0.59
VAM3YOR106W UBP9P39967 754 aa11.37□□□□□ -0.59
VAM3YOR106W YMR1P47147 688 aaKnown RBP RIP-Chip data11.36□□□□□ -0.59not detected
VAM3YOR106W BUD31P25337 157 aaPredicted RBP11.35□□□□□ -0.59
VAM3YOR106W VPS29P38759 282 aa11.35□□□□□ -0.59
VAM3YOR106W PIB1Q06651 286 aa11.31□□□□□ -0.6
VAM3YOR106W GTT3P39996 337 aa11.29□□□□□ -0.6
VAM3YOR106W DBP1P24784 617 aaKnown RBP11.28□□□□□ -0.6
VAM3YOR106W YFR006WP43590 535 aa11.25□□□□□ -0.61
VAM3YOR106W STS1P38637 319 aa11.23□□□□□ -0.61
VAM3YOR106W RAM2P29703 316 aa11.22□□□□□ -0.61
VAM3YOR106W YBL029C-AQ3E756 94 aa11.17□□□□□ -0.62
VAM3YOR106W WSC3Q12215 556 aa11.15□□□□□ -0.62
VAM3YOR106W MAK11P20484 414 aaKnown RBP11.14□□□□□ -0.63
VAM3YOR106W VMA1P17255 1071 aaKnown RBP11.1□□□□□ -0.63
VAM3YOR106W VNX1P42839 908 aa11.07□□□□□ -0.64
VAM3YOR106W MIF2P35201 549 aa11.03□□□□□ -0.64
VAM3YOR106W SPP1Q03012 353 aa11.03□□□□□ -0.64
VAM3YOR106W YOL036WQ08206 761 aa10.99□□□□□ -0.65
VAM3YOR106W SAM3Q08986 587 aa10.99□□□□□ -0.65
VAM3YOR106W MSB4Q12317 492 aa10.99□□□□□ -0.65
VAM3YOR106W COQ8P27697 501 aa10.97□□□□□ -0.65
VAM3YOR106W SET4P42948 560 aa10.97□□□□□ -0.65
VAM3YOR106W TIF11P38912 153 aaKnown RBP10.96□□□□□ -0.65
VAM3YOR106W RQC2Q12532 1038 aaKnown RBP10.96□□□□□ -0.65
VAM3YOR106W DMA1P38823 416 aa10.94□□□□□ -0.66
VAM3YOR106W SIS1P25294 352 aaKnown RBP10.93□□□□□ -0.66
VAM3YOR106W EAP1P36041 632 aaKnown RBP10.91□□□□□ -0.66
VAM3YOR106W EDS1P38073 919 aa10.91□□□□□ -0.66
VAM3YOR106W GYP5Q12344 894 aa10.91□□□□□ -0.66
VAM3YOR106W ULI1P43604 169 aa10.89□□□□□ -0.67
VAM3YOR106W ABP1P15891 592 aaKnown RBP10.88□□□□□ -0.67
VAM3YOR106W PTC3P34221 468 aaKnown RBP10.88□□□□□ -0.67
VAM3YOR106W SET1P38827 1080 aaKnown RBP10.88□□□□□ -0.67
VAM3YOR106W GRE2Q12068 342 aaKnown RBP10.87□□□□□ -0.67
VAM3YOR106W NOP53Q12080 455 aaKnown RBP10.84□□□□□ -0.67
VAM3YOR106W ATH1P48016 1211 aa10.83□□□□□ -0.68
VAM3YOR106W DCW1P36091 449 aa10.81□□□□□ -0.68
VAM3YOR106W TRP5P00931 707 aaKnown RBP10.8□□□□□ -0.68
VAM3YOR106W HTA1P04911 132 aaKnown RBP10.79□□□□□ -0.68
VAM3YOR106W HTA2P04912 132 aa10.79□□□□□ -0.68
VAM3YOR106W LDB19Q12502 818 aa10.79□□□□□ -0.68
VAM3YOR106W GUT1P32190 709 aa10.78□□□□□ -0.68
VAM3YOR106W IOC2Q12072 812 aa10.78□□□□□ -0.68
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms