RNA–Protein interactions for RNA: YLR411W

CTR3, Transcript of High-affinity copper transporter of the plasma membrane, yeastyeast

Gene CTR3, Length 726 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTR3YLR411W MTC1P47018 478 aaKnown RBP16.76■□□□□ 0.27
CTR3YLR411W DRS1P32892 752 aaKnown RBP16.58■□□□□ 0.24
CTR3YLR411W BFR2Q06631 534 aaKnown RBP14.23□□□□□ -0.13
CTR3YLR411W DIP2Q12220 943 aaPredicted RBP14.2□□□□□ -0.14
CTR3YLR411W FAP1P53971 965 aa13.99□□□□□ -0.17
CTR3YLR411W AVT3P36062 692 aa13.97□□□□□ -0.17
CTR3YLR411W ISW2Q08773 1120 aa13.68□□□□□ -0.22
CTR3YLR411W PRI1P10363 409 aa13.61□□□□□ -0.23
CTR3YLR411W RPG1P38249 964 aaKnown RBP13.51□□□□□ -0.25
CTR3YLR411W RSE1Q04693 1361 aaKnown RBP13.47□□□□□ -0.25
CTR3YLR411W AAD16Q02895 342 aa13.4□□□□□ -0.26
CTR3YLR411W TFA1P36100 482 aa13.25□□□□□ -0.29
CTR3YLR411W PRY3P47033 881 aa13.12□□□□□ -0.31
CTR3YLR411W RPL17AP05740 184 aaKnown RBP12.98□□□□□ -0.33
CTR3YLR411W RPL17BP46990 184 aaKnown RBP12.98□□□□□ -0.33
CTR3YLR411W TSR3Q12094 313 aaKnown RBP12.9□□□□□ -0.34
CTR3YLR411W REB1P21538 810 aa12.83□□□□□ -0.36
CTR3YLR411W SPT21P35209 758 aa12.51□□□□□ -0.41
CTR3YLR411W YCK3P39962 524 aa12.45□□□□□ -0.42
CTR3YLR411W MRPL32P25348 183 aa12.39□□□□□ -0.43
CTR3YLR411W HAA1Q12753 694 aaKnown RBP12.38□□□□□ -0.43
CTR3YLR411W RIM101P33400 625 aa12.29□□□□□ -0.44
CTR3YLR411W YKR023WP36119 530 aaKnown RBP12.16□□□□□ -0.46
CTR3YLR411W CDC27P38042 758 aa11.95□□□□□ -0.5
CTR3YLR411W TFC8Q12308 588 aa11.91□□□□□ -0.5
CTR3YLR411W OXP1P28273 1286 aa11.9□□□□□ -0.5
CTR3YLR411W HOP09932 586 aa11.89□□□□□ -0.51
CTR3YLR411W DCD1P06773 312 aa11.8□□□□□ -0.52
CTR3YLR411W YIL055CP40523 627 aaKnown RBP11.7□□□□□ -0.54
CTR3YLR411W PTP3P40048 928 aa11.68□□□□□ -0.54
CTR3YLR411W YAH1Q12184 172 aaKnown RBP11.66□□□□□ -0.54
CTR3YLR411W YGL015CP33199 130 aa11.63□□□□□ -0.55
CTR3YLR411W SSP1P38871 571 aa11.62□□□□□ -0.55
CTR3YLR411W BCH2P36122 765 aa11.55□□□□□ -0.56
CTR3YLR411W RSM7P47150 247 aa11.54□□□□□ -0.56
CTR3YLR411W YLR271WQ06152 274 aa11.52□□□□□ -0.57
CTR3YLR411W UBP10P53874 792 aaPredicted RBP11.5□□□□□ -0.57
CTR3YLR411W MAP2P38174 421 aaKnown RBP11.46□□□□□ -0.57
CTR3YLR411W ARP8Q12386 881 aaKnown RBP RIP-Chip data11.44□□□□□ -0.58not detected
CTR3YLR411W SCY1P53009 804 aa11.4□□□□□ -0.58
CTR3YLR411W AI2P03876 854 aa11.35□□□□□ -0.59
CTR3YLR411W EPS1P40557 701 aa11.33□□□□□ -0.6
CTR3YLR411W BBC1P47068 1157 aa11.29□□□□□ -0.6
CTR3YLR411W BDF1P35817 686 aa11.26□□□□□ -0.61
CTR3YLR411W PSD2P53037 1138 aaKnown RBP11.25□□□□□ -0.61
CTR3YLR411W MGA2P40578 1113 aa11.23□□□□□ -0.61
CTR3YLR411W SLX5P32828 619 aaKnown RBP11.2□□□□□ -0.62
CTR3YLR411W CST9Q06032 482 aa11.15□□□□□ -0.62
CTR3YLR411W TIF4632P39936 914 aaKnown RBP11□□□□□ -0.65
CTR3YLR411W MRM1P25270 412 aa10.99□□□□□ -0.65
CTR3YLR411W TGL3P40308 642 aa10.95□□□□□ -0.66
CTR3YLR411W RQC2Q12532 1038 aaKnown RBP10.92□□□□□ -0.66
CTR3YLR411W RTG3P38165 486 aa10.83□□□□□ -0.68
CTR3YLR411W RCR1P38212 213 aa10.8□□□□□ -0.68
CTR3YLR411W DMA1P38823 416 aa10.8□□□□□ -0.68
CTR3YLR411W NSR1P27476 414 aaKnown RBP RIP-Chip data10.76□□□□□ -0.69not detected
CTR3YLR411W VPS29P38759 282 aa10.75□□□□□ -0.69
CTR3YLR411W RAM2P29703 316 aa10.73□□□□□ -0.69
CTR3YLR411W YAP5P40574 245 aa10.69□□□□□ -0.7
CTR3YLR411W YMR1P47147 688 aaKnown RBP RIP-Chip data10.66□□□□□ -0.7not detected
CTR3YLR411W YOR238WQ08634 303 aa10.64□□□□□ -0.71
CTR3YLR411W MST1P07236 462 aa10.61□□□□□ -0.71
CTR3YLR411W STS1P38637 319 aa10.6□□□□□ -0.71
CTR3YLR411W DBP1P24784 617 aaKnown RBP10.59□□□□□ -0.71
CTR3YLR411W MAK11P20484 414 aaKnown RBP10.58□□□□□ -0.72
CTR3YLR411W YFR006WP43590 535 aa10.57□□□□□ -0.72
CTR3YLR411W PIB1Q06651 286 aa10.55□□□□□ -0.72
CTR3YLR411W COQ8P27697 501 aa10.43□□□□□ -0.74
CTR3YLR411W SET1P38827 1080 aaKnown RBP10.43□□□□□ -0.74
CTR3YLR411W VMA1P17255 1071 aaKnown RBP10.42□□□□□ -0.74
CTR3YLR411W GTT3P39996 337 aa10.4□□□□□ -0.74
CTR3YLR411W MIF2P35201 549 aa10.39□□□□□ -0.75
CTR3YLR411W EDS1P38073 919 aa10.38□□□□□ -0.75
CTR3YLR411W SAM3Q08986 587 aa10.33□□□□□ -0.76
CTR3YLR411W NOP53Q12080 455 aaKnown RBP10.33□□□□□ -0.76
CTR3YLR411W SAS10Q12136 610 aaPredicted RBP10.33□□□□□ -0.76
CTR3YLR411W UBP9P39967 754 aa10.31□□□□□ -0.76
CTR3YLR411W PTC3P34221 468 aaKnown RBP10.3□□□□□ -0.76
CTR3YLR411W WSC3Q12215 556 aa10.27□□□□□ -0.77
CTR3YLR411W YBL029C-AQ3E756 94 aa10.27□□□□□ -0.77
CTR3YLR411W IFH1P39520 1085 aa10.26□□□□□ -0.77
CTR3YLR411W YPR148CQ06523 435 aa10.26□□□□□ -0.77
CTR3YLR411W YOL036WQ08206 761 aa10.25□□□□□ -0.77
CTR3YLR411W BUD31P25337 157 aaPredicted RBP10.24□□□□□ -0.77
CTR3YLR411W VNX1P42839 908 aa10.22□□□□□ -0.77
CTR3YLR411W SET4P42948 560 aa10.21□□□□□ -0.77
CTR3YLR411W GRE2Q12068 342 aaKnown RBP10.21□□□□□ -0.77
CTR3YLR411W MSB4Q12317 492 aa10.21□□□□□ -0.77
CTR3YLR411W GYP5Q12344 894 aa10.21□□□□□ -0.77
CTR3YLR411W ATH1P48016 1211 aa10.18□□□□□ -0.78
CTR3YLR411W VPS70P47161 811 aa10.17□□□□□ -0.78
CTR3YLR411W GUT1P32190 709 aa10.16□□□□□ -0.78
CTR3YLR411W ABP1P15891 592 aaKnown RBP10.15□□□□□ -0.78
CTR3YLR411W TIF11P38912 153 aaKnown RBP10.12□□□□□ -0.79
CTR3YLR411W SPP1Q03012 353 aa10.12□□□□□ -0.79
CTR3YLR411W EAP1P36041 632 aaKnown RBP10.11□□□□□ -0.79
CTR3YLR411W DCW1P36091 449 aa10.11□□□□□ -0.79
CTR3YLR411W CKB1P43639 278 aa10.09□□□□□ -0.79
CTR3YLR411W HTA1P04911 132 aaKnown RBP10.07□□□□□ -0.8
CTR3YLR411W HTA2P04912 132 aa10.07□□□□□ -0.8
Retrieved 100 of 5,963 RNA–protein pairs in 23.4 ms