RNA–Protein interactions for RNA: YLR363C

NMD4, Transcript of Protein that may be involved in nonsense-mediated mRNA decay, yeastyeast

Gene NMD4, Length 657 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NMD4YLR363C MTC1P47018 478 aaKnown RBP17.94■□□□□ 0.46
NMD4YLR363C DRS1P32892 752 aaKnown RBP17.55■□□□□ 0.4
NMD4YLR363C FAP1P53971 965 aa15.24■□□□□ 0.03
NMD4YLR363C DIP2Q12220 943 aaPredicted RBP15.1■□□□□ 0.01
NMD4YLR363C BFR2Q06631 534 aaKnown RBP14.99□□□□□ -0.01
NMD4YLR363C AVT3P36062 692 aa14.76□□□□□ -0.05
NMD4YLR363C ISW2Q08773 1120 aa14.73□□□□□ -0.05
NMD4YLR363C PRI1P10363 409 aa14.67□□□□□ -0.06
NMD4YLR363C RPG1P38249 964 aaKnown RBP14.52□□□□□ -0.09
NMD4YLR363C AAD16Q02895 342 aa14.5□□□□□ -0.09
NMD4YLR363C RSE1Q04693 1361 aaKnown RBP14.4□□□□□ -0.1
NMD4YLR363C PRY3P47033 881 aa14.27□□□□□ -0.13
NMD4YLR363C TSR3Q12094 313 aaKnown RBP13.89□□□□□ -0.19
NMD4YLR363C RPL17AP05740 184 aaKnown RBP13.87□□□□□ -0.19
NMD4YLR363C RPL17BP46990 184 aaKnown RBP13.87□□□□□ -0.19
NMD4YLR363C TFA1P36100 482 aa13.79□□□□□ -0.2
NMD4YLR363C REB1P21538 810 aa13.75□□□□□ -0.21
NMD4YLR363C HAA1Q12753 694 aaKnown RBP13.48□□□□□ -0.25
NMD4YLR363C YCK3P39962 524 aa13.44□□□□□ -0.26
NMD4YLR363C MRPL32P25348 183 aa13.39□□□□□ -0.27
NMD4YLR363C SPT21P35209 758 aa13.3□□□□□ -0.28
NMD4YLR363C RIM101P33400 625 aa13.04□□□□□ -0.32
NMD4YLR363C YKR023WP36119 530 aaKnown RBP12.98□□□□□ -0.33
NMD4YLR363C CDC27P38042 758 aa12.8□□□□□ -0.36
NMD4YLR363C TFC8Q12308 588 aa12.73□□□□□ -0.37
NMD4YLR363C HOP09932 586 aa12.71□□□□□ -0.37
NMD4YLR363C YGL015CP33199 130 aa12.63□□□□□ -0.39
NMD4YLR363C OXP1P28273 1286 aa12.61□□□□□ -0.39
NMD4YLR363C DCD1P06773 312 aa12.6□□□□□ -0.39
NMD4YLR363C YIL055CP40523 627 aaKnown RBP12.48□□□□□ -0.41
NMD4YLR363C PTP3P40048 928 aa12.42□□□□□ -0.42
NMD4YLR363C UBP10P53874 792 aaPredicted RBP12.39□□□□□ -0.43
NMD4YLR363C YAH1Q12184 172 aaKnown RBP12.37□□□□□ -0.43
NMD4YLR363C BCH2P36122 765 aa12.34□□□□□ -0.43
NMD4YLR363C MAP2P38174 421 aaKnown RBP12.34□□□□□ -0.43
NMD4YLR363C SSP1P38871 571 aa12.27□□□□□ -0.45
NMD4YLR363C RSM7P47150 247 aa12.27□□□□□ -0.45
NMD4YLR363C SCY1P53009 804 aa12.24□□□□□ -0.45
NMD4YLR363C YLR271WQ06152 274 aa12.19□□□□□ -0.46
NMD4YLR363C ARP8Q12386 881 aaKnown RBP RIP-Chip data12.16□□□□□ -0.46not detected
NMD4YLR363C EPS1P40557 701 aa12.09□□□□□ -0.47
NMD4YLR363C AI2P03876 854 aa12.08□□□□□ -0.48
NMD4YLR363C BBC1P47068 1157 aa12.08□□□□□ -0.48
NMD4YLR363C SLX5P32828 619 aaKnown RBP12.06□□□□□ -0.48
NMD4YLR363C BDF1P35817 686 aa12.02□□□□□ -0.49
NMD4YLR363C PSD2P53037 1138 aaKnown RBP11.92□□□□□ -0.5
NMD4YLR363C TIF4632P39936 914 aaKnown RBP11.91□□□□□ -0.5
NMD4YLR363C MGA2P40578 1113 aa11.9□□□□□ -0.5
NMD4YLR363C TGL3P40308 642 aa11.82□□□□□ -0.52
NMD4YLR363C CST9Q06032 482 aa11.78□□□□□ -0.52
NMD4YLR363C MRM1P25270 412 aa11.69□□□□□ -0.54
NMD4YLR363C NSR1P27476 414 aaKnown RBP RIP-Chip data11.54□□□□□ -0.56not detected
NMD4YLR363C RTG3P38165 486 aa11.52□□□□□ -0.57
NMD4YLR363C YAP5P40574 245 aa11.48□□□□□ -0.57
NMD4YLR363C YOR238WQ08634 303 aa11.45□□□□□ -0.58
NMD4YLR363C RCR1P38212 213 aa11.41□□□□□ -0.58
NMD4YLR363C VPS29P38759 282 aa11.41□□□□□ -0.58
NMD4YLR363C MST1P07236 462 aa11.4□□□□□ -0.58
NMD4YLR363C YMR1P47147 688 aaKnown RBP RIP-Chip data11.38□□□□□ -0.59not detected
NMD4YLR363C RAM2P29703 316 aa11.3□□□□□ -0.6
NMD4YLR363C DBP1P24784 617 aaKnown RBP11.29□□□□□ -0.6
NMD4YLR363C RQC2Q12532 1038 aaKnown RBP11.27□□□□□ -0.61
NMD4YLR363C PIB1Q06651 286 aa11.26□□□□□ -0.61
NMD4YLR363C STS1P38637 319 aa11.25□□□□□ -0.61
NMD4YLR363C UBP9P39967 754 aa11.24□□□□□ -0.61
NMD4YLR363C YFR006WP43590 535 aa11.24□□□□□ -0.61
NMD4YLR363C MAK11P20484 414 aaKnown RBP11.21□□□□□ -0.61
NMD4YLR363C GTT3P39996 337 aa11.2□□□□□ -0.62
NMD4YLR363C BUD31P25337 157 aaPredicted RBP11.18□□□□□ -0.62
NMD4YLR363C DMA1P38823 416 aa11.16□□□□□ -0.62
NMD4YLR363C VMA1P17255 1071 aaKnown RBP11.1□□□□□ -0.63
NMD4YLR363C YBL029C-AQ3E756 94 aa11.07□□□□□ -0.64
NMD4YLR363C WSC3Q12215 556 aa11.06□□□□□ -0.64
NMD4YLR363C MIF2P35201 549 aa11.05□□□□□ -0.64
NMD4YLR363C COQ8P27697 501 aa11.04□□□□□ -0.64
NMD4YLR363C SAM3Q08986 587 aa11.02□□□□□ -0.65
NMD4YLR363C VNX1P42839 908 aa11.01□□□□□ -0.65
NMD4YLR363C SET1P38827 1080 aaKnown RBP10.98□□□□□ -0.65
NMD4YLR363C EDS1P38073 919 aa10.97□□□□□ -0.65
NMD4YLR363C NOP53Q12080 455 aaKnown RBP10.97□□□□□ -0.65
NMD4YLR363C MSB4Q12317 492 aa10.97□□□□□ -0.65
NMD4YLR363C YOL036WQ08206 761 aa10.96□□□□□ -0.65
NMD4YLR363C PTC3P34221 468 aaKnown RBP10.94□□□□□ -0.66
NMD4YLR363C SPP1Q03012 353 aa10.94□□□□□ -0.66
NMD4YLR363C SET4P42948 560 aa10.92□□□□□ -0.66
NMD4YLR363C GYP5Q12344 894 aa10.92□□□□□ -0.66
NMD4YLR363C TIF11P38912 153 aaKnown RBP10.91□□□□□ -0.66
NMD4YLR363C ABP1P15891 592 aaKnown RBP10.88□□□□□ -0.67
NMD4YLR363C EAP1P36041 632 aaKnown RBP10.88□□□□□ -0.67
NMD4YLR363C GRE2Q12068 342 aaKnown RBP10.88□□□□□ -0.67
NMD4YLR363C ATH1P48016 1211 aa10.85□□□□□ -0.67
NMD4YLR363C IFH1P39520 1085 aa10.84□□□□□ -0.67
NMD4YLR363C ULI1P43604 169 aa10.84□□□□□ -0.67
NMD4YLR363C GUT1P32190 709 aa10.82□□□□□ -0.68
NMD4YLR363C HTA1P04911 132 aaKnown RBP10.79□□□□□ -0.68
NMD4YLR363C HTA2P04912 132 aa10.79□□□□□ -0.68
NMD4YLR363C DCW1P36091 449 aa10.79□□□□□ -0.68
NMD4YLR363C TRP5P00931 707 aaKnown RBP10.77□□□□□ -0.69
NMD4YLR363C IOC2Q12072 812 aa10.77□□□□□ -0.69
NMD4YLR363C SIS1P25294 352 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 5,963 RNA–protein pairs in 49.2 ms