RNA–Protein interactions for RNA: YLR147C

SMD3, Transcript of Core Sm protein Sm D3, yeastyeast

Gene SMD3, Length 306 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMD3YLR147C MTC1P47018 478 aaKnown RBP14.97□□□□□ -0.01
SMD3YLR147C DRS1P32892 752 aaKnown RBP14.61□□□□□ -0.07
SMD3YLR147C FAP1P53971 965 aa12.66□□□□□ -0.38
SMD3YLR147C DIP2Q12220 943 aaPredicted RBP12.59□□□□□ -0.39
SMD3YLR147C BFR2Q06631 534 aaKnown RBP12.46□□□□□ -0.41
SMD3YLR147C AVT3P36062 692 aa12.35□□□□□ -0.43
SMD3YLR147C PRI1P10363 409 aa12.25□□□□□ -0.45
SMD3YLR147C ISW2Q08773 1120 aa12.22□□□□□ -0.45
SMD3YLR147C RPG1P38249 964 aaKnown RBP12.11□□□□□ -0.47
SMD3YLR147C AAD16Q02895 342 aa12.08□□□□□ -0.48
SMD3YLR147C RSE1Q04693 1361 aaKnown RBP11.97□□□□□ -0.49
SMD3YLR147C PRY3P47033 881 aa11.88□□□□□ -0.51
SMD3YLR147C TSR3Q12094 313 aaKnown RBP11.61□□□□□ -0.55
SMD3YLR147C RPL17AP05740 184 aaKnown RBP11.56□□□□□ -0.56
SMD3YLR147C RPL17BP46990 184 aaKnown RBP11.56□□□□□ -0.56
SMD3YLR147C TFA1P36100 482 aa11.5□□□□□ -0.57
SMD3YLR147C REB1P21538 810 aa11.41□□□□□ -0.58
SMD3YLR147C YCK3P39962 524 aa11.36□□□□□ -0.59
SMD3YLR147C HAA1Q12753 694 aaKnown RBP11.2□□□□□ -0.62
SMD3YLR147C SPT21P35209 758 aa11.15□□□□□ -0.62
SMD3YLR147C MRPL32P25348 183 aa11.12□□□□□ -0.63
SMD3YLR147C RIM101P33400 625 aa10.92□□□□□ -0.66
SMD3YLR147C YKR023WP36119 530 aaKnown RBP10.88□□□□□ -0.67
SMD3YLR147C CDC27P38042 758 aa10.74□□□□□ -0.69
SMD3YLR147C TFC8Q12308 588 aa10.64□□□□□ -0.71
SMD3YLR147C HOP09932 586 aa10.63□□□□□ -0.71
SMD3YLR147C OXP1P28273 1286 aa10.58□□□□□ -0.72
SMD3YLR147C DCD1P06773 312 aa10.56□□□□□ -0.72
SMD3YLR147C YGL015CP33199 130 aa10.49□□□□□ -0.73
SMD3YLR147C YIL055CP40523 627 aaKnown RBP10.35□□□□□ -0.75
SMD3YLR147C BCH2P36122 765 aa10.32□□□□□ -0.76
SMD3YLR147C MAP2P38174 421 aaKnown RBP10.31□□□□□ -0.76
SMD3YLR147C UBP10P53874 792 aaPredicted RBP10.31□□□□□ -0.76
SMD3YLR147C PTP3P40048 928 aa10.3□□□□□ -0.76
SMD3YLR147C YAH1Q12184 172 aaKnown RBP10.3□□□□□ -0.76
SMD3YLR147C SSP1P38871 571 aa10.23□□□□□ -0.77
SMD3YLR147C RSM7P47150 247 aa10.23□□□□□ -0.77
SMD3YLR147C SCY1P53009 804 aa10.21□□□□□ -0.77
SMD3YLR147C YLR271WQ06152 274 aa10.2□□□□□ -0.78
SMD3YLR147C EPS1P40557 701 aa10.1□□□□□ -0.79
SMD3YLR147C AI2P03876 854 aa10.07□□□□□ -0.8
SMD3YLR147C BDF1P35817 686 aa10.05□□□□□ -0.8
SMD3YLR147C ARP8Q12386 881 aaKnown RBP RIP-Chip data10.05□□□□□ -0.8not detected
SMD3YLR147C SLX5P32828 619 aaKnown RBP10.03□□□□□ -0.8
SMD3YLR147C BBC1P47068 1157 aa10□□□□□ -0.81
SMD3YLR147C PSD2P53037 1138 aaKnown RBP9.97□□□□□ -0.81
SMD3YLR147C MGA2P40578 1113 aa9.89□□□□□ -0.83
SMD3YLR147C CST9Q06032 482 aa9.87□□□□□ -0.83
SMD3YLR147C TIF4632P39936 914 aaKnown RBP9.85□□□□□ -0.83
SMD3YLR147C TGL3P40308 642 aa9.84□□□□□ -0.83
SMD3YLR147C MRM1P25270 412 aa9.74□□□□□ -0.85
SMD3YLR147C NSR1P27476 414 aaKnown RBP RIP-Chip data9.61□□□□□ -0.87 RIP-Chip
SMD3YLR147C RTG3P38165 486 aa9.58□□□□□ -0.88
SMD3YLR147C RCR1P38212 213 aa9.57□□□□□ -0.88
SMD3YLR147C VPS29P38759 282 aa9.56□□□□□ -0.88
SMD3YLR147C MST1P07236 462 aa9.53□□□□□ -0.88
SMD3YLR147C YAP5P40574 245 aa9.53□□□□□ -0.88
SMD3YLR147C YOR238WQ08634 303 aa9.51□□□□□ -0.89
SMD3YLR147C RAM2P29703 316 aa9.47□□□□□ -0.89
SMD3YLR147C YMR1P47147 688 aaKnown RBP RIP-Chip data9.45□□□□□ -0.9not detected
SMD3YLR147C DBP1P24784 617 aaKnown RBP9.41□□□□□ -0.9
SMD3YLR147C STS1P38637 319 aa9.41□□□□□ -0.9
SMD3YLR147C PIB1Q06651 286 aa9.4□□□□□ -0.9
SMD3YLR147C YFR006WP43590 535 aa9.39□□□□□ -0.91
SMD3YLR147C BUD31P25337 157 aaPredicted RBP9.33□□□□□ -0.92
SMD3YLR147C MAK11P20484 414 aaKnown RBP9.32□□□□□ -0.92
SMD3YLR147C DMA1P38823 416 aa9.3□□□□□ -0.92
SMD3YLR147C UBP9P39967 754 aa9.29□□□□□ -0.92
SMD3YLR147C VMA1P17255 1071 aaKnown RBP9.26□□□□□ -0.93
SMD3YLR147C GTT3P39996 337 aa9.26□□□□□ -0.93
SMD3YLR147C YBL029C-AQ3E756 94 aa9.23□□□□□ -0.93
SMD3YLR147C COQ8P27697 501 aa9.21□□□□□ -0.94
SMD3YLR147C EDS1P38073 919 aa9.2□□□□□ -0.94
SMD3YLR147C SAM3Q08986 587 aa9.2□□□□□ -0.94
SMD3YLR147C WSC3Q12215 556 aa9.2□□□□□ -0.94
SMD3YLR147C RQC2Q12532 1038 aaKnown RBP9.2□□□□□ -0.94
SMD3YLR147C VNX1P42839 908 aa9.19□□□□□ -0.94
SMD3YLR147C MIF2P35201 549 aa9.18□□□□□ -0.94
SMD3YLR147C SET1P38827 1080 aaKnown RBP9.14□□□□□ -0.95
SMD3YLR147C YOL036WQ08206 761 aa9.14□□□□□ -0.95
SMD3YLR147C PTC3P34221 468 aaKnown RBP9.12□□□□□ -0.95
SMD3YLR147C SET4P42948 560 aa9.1□□□□□ -0.95
SMD3YLR147C NOP53Q12080 455 aaKnown RBP9.1□□□□□ -0.95
SMD3YLR147C MSB4Q12317 492 aa9.1□□□□□ -0.95
SMD3YLR147C TIF11P38912 153 aaKnown RBP9.07□□□□□ -0.96
SMD3YLR147C SPP1Q03012 353 aa9.07□□□□□ -0.96
SMD3YLR147C GYP5Q12344 894 aa9.07□□□□□ -0.96
SMD3YLR147C GRE2Q12068 342 aaKnown RBP9.03□□□□□ -0.96
SMD3YLR147C ULI1P43604 169 aa9.02□□□□□ -0.97
SMD3YLR147C EAP1P36041 632 aaKnown RBP9.01□□□□□ -0.97
SMD3YLR147C IOC2Q12072 812 aa9.01□□□□□ -0.97
SMD3YLR147C GUT1P32190 709 aa9□□□□□ -0.97
SMD3YLR147C ABP1P15891 592 aaKnown RBP8.99□□□□□ -0.97
SMD3YLR147C DCW1P36091 449 aa8.99□□□□□ -0.97
SMD3YLR147C ATH1P48016 1211 aa8.99□□□□□ -0.97
SMD3YLR147C TRP5P00931 707 aaKnown RBP8.98□□□□□ -0.97
SMD3YLR147C YPR148CQ06523 435 aa8.98□□□□□ -0.97
SMD3YLR147C SAS10Q12136 610 aaPredicted RBP8.97□□□□□ -0.97
SMD3YLR147C HTA1P04911 132 aaKnown RBP8.95□□□□□ -0.98
SMD3YLR147C HTA2P04912 132 aa8.95□□□□□ -0.98
Retrieved 100 of 5,963 RNA–protein pairs in 19.1 ms