RNA–Protein interactions for RNA: YIL076W

SEC28, Transcript of Epsilon-COP subunit of the coatomer, yeastyeast

Gene SEC28, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC28YIL076W MTC1P47018 478 aaKnown RBP17.37■□□□□ 0.37
SEC28YIL076W DRS1P32892 752 aaKnown RBP16.71■□□□□ 0.27
SEC28YIL076W FAP1P53971 965 aa15.08■□□□□ 0
SEC28YIL076W DIP2Q12220 943 aaPredicted RBP14.46□□□□□ -0.09
SEC28YIL076W PRI1P10363 409 aa14.35□□□□□ -0.11
SEC28YIL076W ISW2Q08773 1120 aa14.27□□□□□ -0.13
SEC28YIL076W AAD16Q02895 342 aa14.19□□□□□ -0.14
SEC28YIL076W PRY3P47033 881 aa14.16□□□□□ -0.14
SEC28YIL076W BFR2Q06631 534 aaKnown RBP14.14□□□□□ -0.15
SEC28YIL076W RPG1P38249 964 aaKnown RBP14.12□□□□□ -0.15
SEC28YIL076W AVT3P36062 692 aa14.07□□□□□ -0.16
SEC28YIL076W RSE1Q04693 1361 aaKnown RBP13.84□□□□□ -0.19
SEC28YIL076W TSR3Q12094 313 aaKnown RBP13.61□□□□□ -0.23
SEC28YIL076W RPL17AP05740 184 aaKnown RBP13.4□□□□□ -0.26
SEC28YIL076W RPL17BP46990 184 aaKnown RBP13.4□□□□□ -0.26
SEC28YIL076W YCK3P39962 524 aa13.37□□□□□ -0.27
SEC28YIL076W REB1P21538 810 aa13.29□□□□□ -0.28
SEC28YIL076W HAA1Q12753 694 aaKnown RBP13.27□□□□□ -0.29
SEC28YIL076W MRPL32P25348 183 aa13.06□□□□□ -0.32
SEC28YIL076W SPT21P35209 758 aa12.84□□□□□ -0.35
SEC28YIL076W TFA1P36100 482 aa12.76□□□□□ -0.37
SEC28YIL076W YKR023WP36119 530 aaKnown RBP12.58□□□□□ -0.4
SEC28YIL076W CDC27P38042 758 aa12.51□□□□□ -0.41
SEC28YIL076W RIM101P33400 625 aa12.49□□□□□ -0.41
SEC28YIL076W YGL015CP33199 130 aa12.36□□□□□ -0.43
SEC28YIL076W HOP09932 586 aa12.35□□□□□ -0.43
SEC28YIL076W TFC8Q12308 588 aa12.32□□□□□ -0.44
SEC28YIL076W DCD1P06773 312 aa12.29□□□□□ -0.44
SEC28YIL076W OXP1P28273 1286 aa12.09□□□□□ -0.47
SEC28YIL076W UBP10P53874 792 aaPredicted RBP12.07□□□□□ -0.48
SEC28YIL076W MAP2P38174 421 aaKnown RBP12.06□□□□□ -0.48
SEC28YIL076W BCH2P36122 765 aa11.94□□□□□ -0.5
SEC28YIL076W SCY1P53009 804 aa11.92□□□□□ -0.5
SEC28YIL076W PTP3P40048 928 aa11.91□□□□□ -0.5
SEC28YIL076W YIL055CP40523 627 aaKnown RBP11.91□□□□□ -0.5
SEC28YIL076W YAH1Q12184 172 aaKnown RBP11.84□□□□□ -0.51
SEC28YIL076W SLX5P32828 619 aaKnown RBP11.73□□□□□ -0.53
SEC28YIL076W RSM7P47150 247 aa11.73□□□□□ -0.53
SEC28YIL076W EPS1P40557 701 aa11.69□□□□□ -0.54
SEC28YIL076W YLR271WQ06152 274 aa11.63□□□□□ -0.55
SEC28YIL076W BDF1P35817 686 aa11.62□□□□□ -0.55
SEC28YIL076W SSP1P38871 571 aa11.61□□□□□ -0.55
SEC28YIL076W AI2P03876 854 aa11.6□□□□□ -0.55
SEC28YIL076W TIF4632P39936 914 aaKnown RBP11.57□□□□□ -0.56
SEC28YIL076W BBC1P47068 1157 aa11.56□□□□□ -0.56
SEC28YIL076W TGL3P40308 642 aa11.49□□□□□ -0.57
SEC28YIL076W ARP8Q12386 881 aaKnown RBP RIP-Chip data11.49□□□□□ -0.57not detected
SEC28YIL076W PSD2P53037 1138 aaKnown RBP11.4□□□□□ -0.58
SEC28YIL076W MGA2P40578 1113 aa11.27□□□□□ -0.61
SEC28YIL076W CST9Q06032 482 aa11.26□□□□□ -0.61
SEC28YIL076W MRM1P25270 412 aa11.21□□□□□ -0.61
SEC28YIL076W NSR1P27476 414 aaKnown RBP RIP-Chip data11.14□□□□□ -0.63not detected
SEC28YIL076W BUD31P25337 157 aaPredicted RBP11.12□□□□□ -0.63
SEC28YIL076W YAP5P40574 245 aa11.08□□□□□ -0.64
SEC28YIL076W YOR238WQ08634 303 aa11.08□□□□□ -0.64
SEC28YIL076W MST1P07236 462 aa11.06□□□□□ -0.64
SEC28YIL076W RTG3P38165 486 aa10.99□□□□□ -0.65
SEC28YIL076W UBP9P39967 754 aa10.99□□□□□ -0.65
SEC28YIL076W RCR1P38212 213 aa10.95□□□□□ -0.66
SEC28YIL076W VPS29P38759 282 aa10.94□□□□□ -0.66
SEC28YIL076W PIB1Q06651 286 aa10.93□□□□□ -0.66
SEC28YIL076W YMR1P47147 688 aaKnown RBP RIP-Chip data10.89□□□□□ -0.67not detected
SEC28YIL076W YBL029C-AQ3E756 94 aa10.86□□□□□ -0.67
SEC28YIL076W GTT3P39996 337 aa10.84□□□□□ -0.67
SEC28YIL076W DBP1P24784 617 aaKnown RBP10.83□□□□□ -0.68
SEC28YIL076W YFR006WP43590 535 aa10.83□□□□□ -0.68
SEC28YIL076W STS1P38637 319 aa10.82□□□□□ -0.68
SEC28YIL076W WSC3Q12215 556 aa10.79□□□□□ -0.68
SEC28YIL076W VNX1P42839 908 aa10.74□□□□□ -0.69
SEC28YIL076W RAM2P29703 316 aa10.73□□□□□ -0.69
SEC28YIL076W VMA1P17255 1071 aaKnown RBP10.68□□□□□ -0.7
SEC28YIL076W SIS1P25294 352 aaKnown RBP10.65□□□□□ -0.7
SEC28YIL076W SPP1Q03012 353 aa10.65□□□□□ -0.7
SEC28YIL076W MAK11P20484 414 aaKnown RBP10.64□□□□□ -0.71
SEC28YIL076W YOL036WQ08206 761 aa10.61□□□□□ -0.71
SEC28YIL076W TIF11P38912 153 aaKnown RBP10.6□□□□□ -0.71
SEC28YIL076W SET4P42948 560 aa10.58□□□□□ -0.72
SEC28YIL076W SAM3Q08986 587 aa10.58□□□□□ -0.72
SEC28YIL076W MSB4Q12317 492 aa10.57□□□□□ -0.72
SEC28YIL076W MIF2P35201 549 aa10.53□□□□□ -0.72
SEC28YIL076W ULI1P43604 169 aa10.51□□□□□ -0.73
SEC28YIL076W COQ8P27697 501 aa10.5□□□□□ -0.73
SEC28YIL076W EDS1P38073 919 aa10.49□□□□□ -0.73
SEC28YIL076W EAP1P36041 632 aaKnown RBP10.48□□□□□ -0.73
SEC28YIL076W GYP5Q12344 894 aa10.48□□□□□ -0.73
SEC28YIL076W IOC2Q12072 812 aa10.45□□□□□ -0.74
SEC28YIL076W LDB19Q12502 818 aa10.44□□□□□ -0.74
SEC28YIL076W TRP5P00931 707 aaKnown RBP10.43□□□□□ -0.74
SEC28YIL076W PTC3P34221 468 aaKnown RBP10.43□□□□□ -0.74
SEC28YIL076W ABP1P15891 592 aaKnown RBP10.41□□□□□ -0.74
SEC28YIL076W GRE2Q12068 342 aaKnown RBP10.4□□□□□ -0.74
SEC28YIL076W DCW1P36091 449 aa10.39□□□□□ -0.75
SEC28YIL076W FKH1P40466 484 aa10.38□□□□□ -0.75
SEC28YIL076W HTA1P04911 132 aaKnown RBP10.36□□□□□ -0.75
SEC28YIL076W HTA2P04912 132 aa10.36□□□□□ -0.75
SEC28YIL076W ATH1P48016 1211 aa10.36□□□□□ -0.75
SEC28YIL076W SET1P38827 1080 aaKnown RBP10.34□□□□□ -0.75
SEC28YIL076W AIR2Q12476 344 aaKnown RBP10.33□□□□□ -0.76
SEC28YIL076W GUT1P32190 709 aa10.31□□□□□ -0.76
SEC28YIL076W RTG1P32607 177 aa10.31□□□□□ -0.76
Retrieved 100 of 5,963 RNA–protein pairs in 54.9 ms