RNA–Protein interactions for RNA: YGR247W

CPD1, Transcript of Cyclic nucleotide phosphodiesterase, yeastyeast

Gene CPD1, Length 720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CPD1YGR247W MON2P48563 1636 aaPredicted RBP19.51■□□□□ 0.71
CPD1YGR247W INO80P53115 1489 aa19.48■□□□□ 0.71
CPD1YGR247W DNA2P38859 1522 aa18.57■□□□□ 0.56
CPD1YGR247W SWR1Q05471 1514 aa18.52■□□□□ 0.56
CPD1YGR247W TCB3Q03640 1545 aaKnown RBP18.36■□□□□ 0.53
CPD1YGR247W KOG1P38873 1557 aa18.3■□□□□ 0.52
CPD1YGR247W TY1B-DR4Q07793 1604 aa18.29■□□□□ 0.52
CPD1YGR247W SGS1P35187 1447 aa17.98■□□□□ 0.47
CPD1YGR247W RSE1Q04693 1361 aaKnown RBP17.96■□□□□ 0.47
CPD1YGR247W HSL1P34244 1518 aa17.63■□□□□ 0.41
CPD1YGR247W SPT6P23615 1451 aaKnown RBP17.62■□□□□ 0.41
CPD1YGR247W SPA2P23201 1466 aaKnown RBP17.45■□□□□ 0.38
CPD1YGR247W ECM5Q03214 1411 aa17.3■□□□□ 0.36
CPD1YGR247W HIR3P47171 1648 aa17.24■□□□□ 0.35
CPD1YGR247W THO2P53552 1597 aaKnown RBP17.17■□□□□ 0.34
CPD1YGR247W BUD4P47136 1447 aa17.16■□□□□ 0.34
CPD1YGR247W MTC1P47018 478 aaKnown RBP17.02■□□□□ 0.32
CPD1YGR247W MDS3P53094 1487 aa17■□□□□ 0.31
CPD1YGR247W XRN1P22147 1528 aaKnown RBP16.9■□□□□ 0.3
CPD1YGR247W PEP1P32319 1579 aa16.81■□□□□ 0.28
CPD1YGR247W REV3P14284 1504 aa16.72■□□□□ 0.27
CPD1YGR247W ATG2P53855 1592 aa16.67■□□□□ 0.26
CPD1YGR247W BPT1P14772 1559 aa16.57■□□□□ 0.24
CPD1YGR247W SSN2P38931 1420 aa16.46■□□□□ 0.23
CPD1YGR247W SKI3P17883 1432 aaKnown RBP16.39■□□□□ 0.21
CPD1YGR247W TAF2P23255 1407 aa16.37■□□□□ 0.21
CPD1YGR247W SIN3P22579 1536 aa16.37■□□□□ 0.21
CPD1YGR247W SSK2P53599 1579 aa16.34■□□□□ 0.21
CPD1YGR247W YCF1P39109 1515 aaKnown RBP16.29■□□□□ 0.2
CPD1YGR247W ESP1Q03018 1630 aa16.15■□□□□ 0.18
CPD1YGR247W UFD4P33202 1483 aa16.11■□□□□ 0.17
CPD1YGR247W YPK9Q12697 1472 aa15.98■□□□□ 0.15
CPD1YGR247W SCC2Q04002 1493 aa15.97■□□□□ 0.15
CPD1YGR247W DRS1P32892 752 aaKnown RBP15.93■□□□□ 0.14
CPD1YGR247W MYO2P19524 1574 aaKnown RBP15.92■□□□□ 0.14
CPD1YGR247W RPO31P04051 1460 aa15.89■□□□□ 0.13
CPD1YGR247W CHD1P32657 1468 aa15.88■□□□□ 0.13
CPD1YGR247W CDC25P04821 1589 aa15.87■□□□□ 0.13
CPD1YGR247W MET5P47169 1442 aa15.87■□□□□ 0.13
CPD1YGR247W DNF1P32660 1571 aa15.81■□□□□ 0.12
CPD1YGR247W ESC1Q03661 1658 aaKnown RBP15.79■□□□□ 0.12
CPD1YGR247W MIF2P35201 549 aa15.76■□□□□ 0.11
CPD1YGR247W TY2B-LR1P0C2J3 1770 aa15.76■□□□□ 0.11
CPD1YGR247W TY2B-FP0CX63 1770 aa15.76■□□□□ 0.11
CPD1YGR247W TY2B-GR2P0CX64 1770 aa15.76■□□□□ 0.11
CPD1YGR247W TY2B-CP25384 1770 aa15.76■□□□□ 0.11
CPD1YGR247W TY2B-DR2Q03494 1770 aa15.76■□□□□ 0.11
CPD1YGR247W TY1B-DR1Q03855 1755 aa15.76■□□□□ 0.11
CPD1YGR247W TY2B-DR3Q07791 1770 aaKnown RBP15.76■□□□□ 0.11
CPD1YGR247W TY2B-OR1Q12113 1770 aa15.76■□□□□ 0.11
CPD1YGR247W TY2B-DR1Q12472 1770 aa15.76■□□□□ 0.11
CPD1YGR247W TY2B-OR2Q12501 1770 aa15.76■□□□□ 0.11
CPD1YGR247W RQC2Q12532 1038 aaKnown RBP15.74■□□□□ 0.11
CPD1YGR247W LTE1P07866 1435 aa15.74■□□□□ 0.11
CPD1YGR247W TY1B-BRQ12193 1756 aa15.72■□□□□ 0.11
CPD1YGR247W TY1B-GR3Q12316 1755 aa15.72■□□□□ 0.11
CPD1YGR247W TY1B-ORQ92393 1755 aa15.72■□□□□ 0.11
CPD1YGR247W PAN1P32521 1480 aa15.71■□□□□ 0.11
CPD1YGR247W RKR1Q04781 1562 aa15.7■□□□□ 0.1
CPD1YGR247W TOP2P06786 1428 aaKnown RBP15.61■□□□□ 0.09
CPD1YGR247W RPA190P10964 1664 aaKnown RBP15.61■□□□□ 0.09
CPD1YGR247W TY2B-BQ12491 1770 aa15.56■□□□□ 0.08
CPD1YGR247W BNI1P41832 1953 aa15.55■□□□□ 0.08
CPD1YGR247W TY1B-HO13535 1793 aa15.55■□□□□ 0.08
CPD1YGR247W TY1B-DR5P0C2I2 1755 aa15.55■□□□□ 0.08
CPD1YGR247W TY1B-DR6P0C2I3 1755 aa15.55■□□□□ 0.08
CPD1YGR247W TY1B-LR2P0C2I5 1755 aa15.55■□□□□ 0.08
CPD1YGR247W TY1B-LR3P0C2I6 1755 aaKnown RBP15.55■□□□□ 0.08
CPD1YGR247W TY1B-PR1P0C2I9 1755 aaKnown RBP15.55■□□□□ 0.08
CPD1YGR247W TY1B-PR2P0C2J0 1756 aa15.55■□□□□ 0.08
CPD1YGR247W TY1B-PR3P0C2J1 1755 aaKnown RBP15.55■□□□□ 0.08
CPD1YGR247W TY1B-JR1P47098 1755 aa15.55■□□□□ 0.08
CPD1YGR247W TY1B-ML2Q03434 1755 aaKnown RBP15.55■□□□□ 0.08
CPD1YGR247W TY1B-ER1Q03612 1755 aa15.55■□□□□ 0.08
CPD1YGR247W TY1B-ML1Q04711 1755 aaKnown RBP15.55■□□□□ 0.08
CPD1YGR247W TY1B-GR2Q12269 1755 aa15.55■□□□□ 0.08
CPD1YGR247W TY1B-OLQ12273 1755 aa15.55■□□□□ 0.08
CPD1YGR247W TY1B-PLQ12414 1755 aaKnown RBP15.55■□□□□ 0.08
CPD1YGR247W GEA2P39993 1459 aaKnown RBP15.52■□□□□ 0.08
CPD1YGR247W MMS22Q06164 1454 aa15.52■□□□□ 0.07
CPD1YGR247W TY1B-DR3Q99231 1755 aa15.49■□□□□ 0.07
CPD1YGR247W TRM732Q03496 1420 aa15.47■□□□□ 0.07
CPD1YGR247W ITT1Q04638 464 aa15.47■□□□□ 0.07
CPD1YGR247W POL1P13382 1468 aa15.4■□□□□ 0.06
CPD1YGR247W ABP1P15891 592 aaKnown RBP15.35■□□□□ 0.05
CPD1YGR247W SMC4Q12267 1418 aa15.34■□□□□ 0.05
CPD1YGR247W MMS1Q06211 1407 aa15.32■□□□□ 0.04
CPD1YGR247W NUP159P40477 1460 aa15.32■□□□□ 0.04
CPD1YGR247W YRF1-1P0CX20 1796 aa15.31■□□□□ 0.04
CPD1YGR247W YRF1-5P0CX21 1796 aa15.31■□□□□ 0.04
CPD1YGR247W YRF1-8P0CX22 1796 aa15.31■□□□□ 0.04
CPD1YGR247W SPP41P38904 1435 aa15.31■□□□□ 0.04
CPD1YGR247W YOR1P53049 1477 aa15.31■□□□□ 0.04
CPD1YGR247W VPS15P22219 1454 aa15.28■□□□□ 0.04
CPD1YGR247W DRS2P39524 1355 aa15.27■□□□□ 0.04
CPD1YGR247W STU1P38198 1513 aa15.25■□□□□ 0.03
CPD1YGR247W TY1B-JR2P47100 1755 aaKnown RBP15.22■□□□□ 0.03
CPD1YGR247W TY1B-ER2Q03619 1755 aa15.22■□□□□ 0.03
CPD1YGR247W TY1B-MR1Q04214 1755 aa15.22■□□□□ 0.03
CPD1YGR247W TY1B-MR2Q04670 1755 aaKnown RBP15.22■□□□□ 0.03
Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms