RNA–Protein interactions for RNA: YGR002C

SWC4, Transcript of Component of the Swr1p complex that incorporates Htz1p into chromatin, yeastyeast

Gene SWC4, Length 1,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SWC4YGR002C MTC1P47018 478 aaKnown RBP10.96□□□□□ -0.65
SWC4YGR002C DRS1P32892 752 aaKnown RBP10.67□□□□□ -0.7
SWC4YGR002C FAP1P53971 965 aa9.52□□□□□ -0.89
SWC4YGR002C DIP2Q12220 943 aaPredicted RBP9.2□□□□□ -0.94
SWC4YGR002C BFR2Q06631 534 aaKnown RBP9.08□□□□□ -0.96
SWC4YGR002C ISW2Q08773 1120 aa9.05□□□□□ -0.96
SWC4YGR002C PRI1P10363 409 aa8.99□□□□□ -0.97
SWC4YGR002C AVT3P36062 692 aa8.92□□□□□ -0.98
SWC4YGR002C RPG1P38249 964 aaKnown RBP8.92□□□□□ -0.98
SWC4YGR002C AAD16Q02895 342 aa8.92□□□□□ -0.98
SWC4YGR002C PRY3P47033 881 aa8.89□□□□□ -0.99
SWC4YGR002C RSE1Q04693 1361 aaKnown RBP8.79□□□□□ -1
SWC4YGR002C TSR3Q12094 313 aaKnown RBP8.57□□□□□ -1.04
SWC4YGR002C RPL17AP05740 184 aaKnown RBP8.49□□□□□ -1.05
SWC4YGR002C RPL17BP46990 184 aaKnown RBP8.49□□□□□ -1.05
SWC4YGR002C REB1P21538 810 aa8.46□□□□□ -1.05
SWC4YGR002C HAA1Q12753 694 aaKnown RBP8.33□□□□□ -1.08
SWC4YGR002C YCK3P39962 524 aa8.31□□□□□ -1.08
SWC4YGR002C TFA1P36100 482 aa8.28□□□□□ -1.08
SWC4YGR002C MRPL32P25348 183 aa8.26□□□□□ -1.09
SWC4YGR002C SPT21P35209 758 aa8.08□□□□□ -1.12
SWC4YGR002C YKR023WP36119 530 aaKnown RBP7.91□□□□□ -1.14
SWC4YGR002C RIM101P33400 625 aa7.9□□□□□ -1.14
SWC4YGR002C CDC27P38042 758 aa7.86□□□□□ -1.15
SWC4YGR002C HOP09932 586 aa7.8□□□□□ -1.16
SWC4YGR002C YGL015CP33199 130 aa7.78□□□□□ -1.16
SWC4YGR002C DCD1P06773 312 aa7.77□□□□□ -1.17
SWC4YGR002C TFC8Q12308 588 aa7.77□□□□□ -1.17
SWC4YGR002C OXP1P28273 1286 aa7.63□□□□□ -1.19
SWC4YGR002C YIL055CP40523 627 aaKnown RBP7.62□□□□□ -1.19
SWC4YGR002C PTP3P40048 928 aa7.61□□□□□ -1.19
SWC4YGR002C MAP2P38174 421 aaKnown RBP7.59□□□□□ -1.19
SWC4YGR002C UBP10P53874 792 aaPredicted RBP7.59□□□□□ -1.19
SWC4YGR002C YAH1Q12184 172 aaKnown RBP7.57□□□□□ -1.2
SWC4YGR002C BCH2P36122 765 aa7.53□□□□□ -1.2
SWC4YGR002C SCY1P53009 804 aa7.52□□□□□ -1.2
SWC4YGR002C RSM7P47150 247 aa7.46□□□□□ -1.21
SWC4YGR002C SSP1P38871 571 aa7.43□□□□□ -1.22
SWC4YGR002C SLX5P32828 619 aaKnown RBP7.41□□□□□ -1.22
SWC4YGR002C EPS1P40557 701 aa7.39□□□□□ -1.23
SWC4YGR002C YLR271WQ06152 274 aa7.38□□□□□ -1.23
SWC4YGR002C BBC1P47068 1157 aa7.37□□□□□ -1.23
SWC4YGR002C ARP8Q12386 881 aaKnown RBP RIP-Chip data7.37□□□□□ -1.23not detected
SWC4YGR002C AI2P03876 854 aa7.36□□□□□ -1.23
SWC4YGR002C BUD31P25337 157 aaPredicted RBP7.35□□□□□ -1.23
SWC4YGR002C BDF1P35817 686 aa7.35□□□□□ -1.23
SWC4YGR002C TIF4632P39936 914 aaKnown RBP7.32□□□□□ -1.24
SWC4YGR002C TGL3P40308 642 aa7.23□□□□□ -1.25
SWC4YGR002C PSD2P53037 1138 aaKnown RBP7.2□□□□□ -1.26
SWC4YGR002C MGA2P40578 1113 aa7.18□□□□□ -1.26
SWC4YGR002C CST9Q06032 482 aa7.16□□□□□ -1.26
SWC4YGR002C MRM1P25270 412 aa7.13□□□□□ -1.27
SWC4YGR002C YAP5P40574 245 aa7.01□□□□□ -1.29
SWC4YGR002C RTG3P38165 486 aa7.01□□□□□ -1.29
SWC4YGR002C YOR238WQ08634 303 aa7.01□□□□□ -1.29
SWC4YGR002C NSR1P27476 414 aaKnown RBP RIP-Chip data6.98□□□□□ -1.29not detected
SWC4YGR002C UBP9P39967 754 aa6.94□□□□□ -1.3
SWC4YGR002C RCR1P38212 213 aa6.93□□□□□ -1.3
SWC4YGR002C PIB1Q06651 286 aa6.93□□□□□ -1.3
SWC4YGR002C RQC2Q12532 1038 aaKnown RBP6.93□□□□□ -1.3
SWC4YGR002C MST1P07236 462 aa6.92□□□□□ -1.3
SWC4YGR002C VPS29P38759 282 aa6.91□□□□□ -1.3
SWC4YGR002C GTT3P39996 337 aa6.91□□□□□ -1.3
SWC4YGR002C YMR1P47147 688 aaKnown RBP RIP-Chip data6.91□□□□□ -1.3not detected
SWC4YGR002C YFR006WP43590 535 aa6.88□□□□□ -1.31
SWC4YGR002C DBP1P24784 617 aaKnown RBP6.87□□□□□ -1.31
SWC4YGR002C SIS1P25294 352 aaKnown RBP6.85□□□□□ -1.31
SWC4YGR002C DMA1P38823 416 aa6.84□□□□□ -1.32
SWC4YGR002C RAM2P29703 316 aa6.83□□□□□ -1.32
SWC4YGR002C STS1P38637 319 aa6.83□□□□□ -1.32
SWC4YGR002C WSC3Q12215 556 aa6.83□□□□□ -1.32
SWC4YGR002C YBL029C-AQ3E756 94 aa6.83□□□□□ -1.32
SWC4YGR002C MAK11P20484 414 aaKnown RBP6.76□□□□□ -1.33
SWC4YGR002C VMA1P17255 1071 aaKnown RBP6.76□□□□□ -1.33
SWC4YGR002C MIF2P35201 549 aa6.75□□□□□ -1.33
SWC4YGR002C VNX1P42839 908 aa6.75□□□□□ -1.33
SWC4YGR002C SPP1Q03012 353 aa6.74□□□□□ -1.33
SWC4YGR002C SET4P42948 560 aa6.71□□□□□ -1.34
SWC4YGR002C YOL036WQ08206 761 aa6.7□□□□□ -1.34
SWC4YGR002C COQ8P27697 501 aa6.68□□□□□ -1.34
SWC4YGR002C TIF11P38912 153 aaKnown RBP6.68□□□□□ -1.34
SWC4YGR002C MSB4Q12317 492 aa6.67□□□□□ -1.34
SWC4YGR002C SAM3Q08986 587 aa6.67□□□□□ -1.34
SWC4YGR002C GYP5Q12344 894 aa6.66□□□□□ -1.34
SWC4YGR002C EAP1P36041 632 aaKnown RBP6.64□□□□□ -1.35
SWC4YGR002C EDS1P38073 919 aa6.64□□□□□ -1.35
SWC4YGR002C ULI1P43604 169 aa6.64□□□□□ -1.35
SWC4YGR002C PTC3P34221 468 aaKnown RBP6.62□□□□□ -1.35
SWC4YGR002C SET1P38827 1080 aaKnown RBP6.62□□□□□ -1.35
SWC4YGR002C GRE2Q12068 342 aaKnown RBP6.62□□□□□ -1.35
SWC4YGR002C DCW1P36091 449 aa6.61□□□□□ -1.35
SWC4YGR002C ABP1P15891 592 aaKnown RBP6.6□□□□□ -1.35
SWC4YGR002C ATH1P48016 1211 aa6.6□□□□□ -1.35
SWC4YGR002C TRP5P00931 707 aaKnown RBP6.59□□□□□ -1.36
SWC4YGR002C HTA1P04911 132 aaKnown RBP6.59□□□□□ -1.36
SWC4YGR002C HTA2P04912 132 aa6.59□□□□□ -1.36
SWC4YGR002C LDB19Q12502 818 aa6.59□□□□□ -1.36
SWC4YGR002C GUT1P32190 709 aa6.56□□□□□ -1.36
SWC4YGR002C IOC2Q12072 812 aa6.56□□□□□ -1.36
SWC4YGR002C NOP53Q12080 455 aaKnown RBP6.55□□□□□ -1.36
Retrieved 100 of 5,963 RNA–protein pairs in 42 ms