RNA–Protein interactions for RNA: YFR002W

NIC96, Transcript of Linker nucleoporin component of the nuclear pore complex (NPC), yeastyeast

Gene NIC96, Length 2,520 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIC96YFR002W MTC1P47018 478 aaKnown RBP10.03□□□□□ -0.8
NIC96YFR002W DRS1P32892 752 aaKnown RBP9.65□□□□□ -0.86
NIC96YFR002W FAP1P53971 965 aa8.64□□□□□ -1.03
NIC96YFR002W DIP2Q12220 943 aaPredicted RBP8.35□□□□□ -1.07
NIC96YFR002W PRI1P10363 409 aa8.29□□□□□ -1.08
NIC96YFR002W ISW2Q08773 1120 aa8.22□□□□□ -1.09
NIC96YFR002W AAD16Q02895 342 aa8.18□□□□□ -1.1
NIC96YFR002W AVT3P36062 692 aa8.17□□□□□ -1.1
NIC96YFR002W BFR2Q06631 534 aaKnown RBP8.16□□□□□ -1.1
NIC96YFR002W RPG1P38249 964 aaKnown RBP8.14□□□□□ -1.11
NIC96YFR002W PRY3P47033 881 aa8.12□□□□□ -1.11
NIC96YFR002W RSE1Q04693 1361 aaKnown RBP7.98□□□□□ -1.13
NIC96YFR002W TSR3Q12094 313 aaKnown RBP7.85□□□□□ -1.15
NIC96YFR002W YCK3P39962 524 aa7.76□□□□□ -1.17
NIC96YFR002W RPL17AP05740 184 aaKnown RBP7.72□□□□□ -1.17
NIC96YFR002W RPL17BP46990 184 aaKnown RBP7.72□□□□□ -1.17
NIC96YFR002W REB1P21538 810 aa7.63□□□□□ -1.19
NIC96YFR002W HAA1Q12753 694 aaKnown RBP7.63□□□□□ -1.19
NIC96YFR002W MRPL32P25348 183 aa7.5□□□□□ -1.21
NIC96YFR002W SPT21P35209 758 aa7.45□□□□□ -1.22
NIC96YFR002W TFA1P36100 482 aa7.42□□□□□ -1.22
NIC96YFR002W YKR023WP36119 530 aaKnown RBP7.29□□□□□ -1.24
NIC96YFR002W RIM101P33400 625 aa7.24□□□□□ -1.25
NIC96YFR002W CDC27P38042 758 aa7.24□□□□□ -1.25
NIC96YFR002W TFC8Q12308 588 aa7.13□□□□□ -1.27
NIC96YFR002W HOP09932 586 aa7.12□□□□□ -1.27
NIC96YFR002W YGL015CP33199 130 aa7.11□□□□□ -1.27
NIC96YFR002W DCD1P06773 312 aa7.09□□□□□ -1.27
NIC96YFR002W OXP1P28273 1286 aa7.02□□□□□ -1.29
NIC96YFR002W UBP10P53874 792 aaPredicted RBP6.97□□□□□ -1.29
NIC96YFR002W MAP2P38174 421 aaKnown RBP6.96□□□□□ -1.3
NIC96YFR002W BCH2P36122 765 aa6.91□□□□□ -1.3
NIC96YFR002W SCY1P53009 804 aa6.86□□□□□ -1.31
NIC96YFR002W YIL055CP40523 627 aaKnown RBP6.86□□□□□ -1.31
NIC96YFR002W PTP3P40048 928 aa6.85□□□□□ -1.31
NIC96YFR002W YAH1Q12184 172 aaKnown RBP6.82□□□□□ -1.32
NIC96YFR002W RSM7P47150 247 aa6.78□□□□□ -1.32
NIC96YFR002W SLX5P32828 619 aaKnown RBP6.75□□□□□ -1.33
NIC96YFR002W EPS1P40557 701 aa6.75□□□□□ -1.33
NIC96YFR002W YLR271WQ06152 274 aa6.75□□□□□ -1.33
NIC96YFR002W BDF1P35817 686 aa6.72□□□□□ -1.33
NIC96YFR002W SSP1P38871 571 aa6.72□□□□□ -1.33
NIC96YFR002W AI2P03876 854 aa6.7□□□□□ -1.34
NIC96YFR002W BBC1P47068 1157 aa6.66□□□□□ -1.34
NIC96YFR002W TIF4632P39936 914 aaKnown RBP6.65□□□□□ -1.34
NIC96YFR002W TGL3P40308 642 aa6.63□□□□□ -1.35
NIC96YFR002W PSD2P53037 1138 aaKnown RBP6.62□□□□□ -1.35
NIC96YFR002W ARP8Q12386 881 aaKnown RBP RIP-Chip data6.62□□□□□ -1.35 RIP-Chip
NIC96YFR002W MGA2P40578 1113 aa6.52□□□□□ -1.37
NIC96YFR002W CST9Q06032 482 aa6.52□□□□□ -1.37
NIC96YFR002W MRM1P25270 412 aa6.47□□□□□ -1.37
NIC96YFR002W NSR1P27476 414 aaKnown RBP RIP-Chip data6.46□□□□□ -1.38not detected
NIC96YFR002W MST1P07236 462 aa6.42□□□□□ -1.38
NIC96YFR002W BUD31P25337 157 aaPredicted RBP6.41□□□□□ -1.38
NIC96YFR002W YAP5P40574 245 aa6.39□□□□□ -1.39
NIC96YFR002W YOR238WQ08634 303 aa6.38□□□□□ -1.39
NIC96YFR002W RCR1P38212 213 aa6.35□□□□□ -1.39
NIC96YFR002W RTG3P38165 486 aa6.34□□□□□ -1.39
NIC96YFR002W VPS29P38759 282 aa6.34□□□□□ -1.39
NIC96YFR002W UBP9P39967 754 aa6.31□□□□□ -1.4
NIC96YFR002W PIB1Q06651 286 aa6.29□□□□□ -1.4
NIC96YFR002W YMR1P47147 688 aaKnown RBP RIP-Chip data6.29□□□□□ -1.4not detected
NIC96YFR002W STS1P38637 319 aa6.27□□□□□ -1.41
NIC96YFR002W DBP1P24784 617 aaKnown RBP6.26□□□□□ -1.41
NIC96YFR002W YBL029C-AQ3E756 94 aa6.25□□□□□ -1.41
NIC96YFR002W YFR006WP43590 535 aa6.25□□□□□ -1.41
NIC96YFR002W RAM2P29703 316 aa6.24□□□□□ -1.41
NIC96YFR002W GTT3P39996 337 aa6.22□□□□□ -1.41
NIC96YFR002W VNX1P42839 908 aa6.2□□□□□ -1.42
NIC96YFR002W WSC3Q12215 556 aa6.19□□□□□ -1.42
NIC96YFR002W VMA1P17255 1071 aaKnown RBP6.18□□□□□ -1.42
NIC96YFR002W MAK11P20484 414 aaKnown RBP6.16□□□□□ -1.42
NIC96YFR002W SAM3Q08986 587 aa6.14□□□□□ -1.43
NIC96YFR002W SPP1Q03012 353 aa6.13□□□□□ -1.43
NIC96YFR002W YOL036WQ08206 761 aa6.12□□□□□ -1.43
NIC96YFR002W TIF11P38912 153 aaKnown RBP6.11□□□□□ -1.43
NIC96YFR002W SIS1P25294 352 aaKnown RBP6.1□□□□□ -1.43
NIC96YFR002W SET4P42948 560 aa6.1□□□□□ -1.43
NIC96YFR002W MSB4Q12317 492 aa6.1□□□□□ -1.43
NIC96YFR002W EDS1P38073 919 aa6.09□□□□□ -1.43
NIC96YFR002W COQ8P27697 501 aa6.07□□□□□ -1.44
NIC96YFR002W MIF2P35201 549 aa6.07□□□□□ -1.44
NIC96YFR002W ULI1P43604 169 aa6.06□□□□□ -1.44
NIC96YFR002W IOC2Q12072 812 aa6.05□□□□□ -1.44
NIC96YFR002W GYP5Q12344 894 aa6.04□□□□□ -1.44
NIC96YFR002W PTC3P34221 468 aaKnown RBP6.03□□□□□ -1.44
NIC96YFR002W EAP1P36041 632 aaKnown RBP6.03□□□□□ -1.44
NIC96YFR002W TRP5P00931 707 aaKnown RBP6.02□□□□□ -1.45
NIC96YFR002W LDB19Q12502 818 aa6.01□□□□□ -1.45
NIC96YFR002W ABP1P15891 592 aaKnown RBP6□□□□□ -1.45
NIC96YFR002W GRE2Q12068 342 aaKnown RBP6□□□□□ -1.45
NIC96YFR002W FKH1P40466 484 aa5.99□□□□□ -1.45
NIC96YFR002W DCW1P36091 449 aa5.99□□□□□ -1.45
NIC96YFR002W SET1P38827 1080 aaKnown RBP5.98□□□□□ -1.45
NIC96YFR002W NOP53Q12080 455 aaKnown RBP5.98□□□□□ -1.45
NIC96YFR002W HTA1P04911 132 aaKnown RBP5.97□□□□□ -1.45
NIC96YFR002W HTA2P04912 132 aa5.97□□□□□ -1.45
NIC96YFR002W AIR2Q12476 344 aaKnown RBP5.97□□□□□ -1.45
NIC96YFR002W GUT1P32190 709 aa5.96□□□□□ -1.45
NIC96YFR002W ATH1P48016 1211 aa5.96□□□□□ -1.45
Retrieved 100 of 5,963 RNA–protein pairs in 30.4 ms