RNA–Protein interactions for RNA: YDR425W

SNX41, Transcript of Sorting nexin, yeastyeast

Gene SNX41, Length 1,878 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNX41YDR425W MTC1P47018 478 aaKnown RBP9.19□□□□□ -0.94
SNX41YDR425W FAP1P53971 965 aa8.89□□□□□ -0.99
SNX41YDR425W DRS1P32892 752 aaKnown RBP8.86□□□□□ -0.99
SNX41YDR425W PRY3P47033 881 aa8.38□□□□□ -1.07
SNX41YDR425W AAD16Q02895 342 aa7.83□□□□□ -1.16
SNX41YDR425W HAA1Q12753 694 aaKnown RBP7.81□□□□□ -1.16
SNX41YDR425W YCK3P39962 524 aa7.8□□□□□ -1.16
SNX41YDR425W PRI1P10363 409 aa7.7□□□□□ -1.18
SNX41YDR425W DIP2Q12220 943 aaPredicted RBP7.66□□□□□ -1.18
SNX41YDR425W AVT3P36062 692 aa7.53□□□□□ -1.2
SNX41YDR425W BFR2Q06631 534 aaKnown RBP7.53□□□□□ -1.2
SNX41YDR425W ISW2Q08773 1120 aa7.51□□□□□ -1.21
SNX41YDR425W RPG1P38249 964 aaKnown RBP7.41□□□□□ -1.22
SNX41YDR425W RSE1Q04693 1361 aaKnown RBP7.32□□□□□ -1.24
SNX41YDR425W TSR3Q12094 313 aaKnown RBP7.22□□□□□ -1.25
SNX41YDR425W RPL17AP05740 184 aaKnown RBP7.04□□□□□ -1.28
SNX41YDR425W RPL17BP46990 184 aaKnown RBP7.04□□□□□ -1.28
SNX41YDR425W YGL015CP33199 130 aa7.02□□□□□ -1.29
SNX41YDR425W MRPL32P25348 183 aa6.99□□□□□ -1.29
SNX41YDR425W REB1P21538 810 aa6.97□□□□□ -1.29
SNX41YDR425W BUD31P25337 157 aaPredicted RBP6.97□□□□□ -1.29
SNX41YDR425W TFA1P36100 482 aa6.94□□□□□ -1.3
SNX41YDR425W SPT21P35209 758 aa6.83□□□□□ -1.32
SNX41YDR425W RIM101P33400 625 aa6.66□□□□□ -1.34
SNX41YDR425W YKR023WP36119 530 aaKnown RBP6.66□□□□□ -1.34
SNX41YDR425W CDC27P38042 758 aa6.58□□□□□ -1.36
SNX41YDR425W SIS1P25294 352 aaKnown RBP6.56□□□□□ -1.36
SNX41YDR425W TFC8Q12308 588 aa6.53□□□□□ -1.36
SNX41YDR425W HOP09932 586 aa6.47□□□□□ -1.37
SNX41YDR425W OXP1P28273 1286 aa6.43□□□□□ -1.38
SNX41YDR425W DCD1P06773 312 aa6.42□□□□□ -1.38
SNX41YDR425W UBP10P53874 792 aaPredicted RBP6.4□□□□□ -1.39
SNX41YDR425W UBP9P39967 754 aa6.34□□□□□ -1.39
SNX41YDR425W MAP2P38174 421 aaKnown RBP6.32□□□□□ -1.4
SNX41YDR425W BCH2P36122 765 aa6.32□□□□□ -1.4
SNX41YDR425W YIL055CP40523 627 aaKnown RBP6.3□□□□□ -1.4
SNX41YDR425W PTP3P40048 928 aa6.26□□□□□ -1.41
SNX41YDR425W SCY1P53009 804 aa6.25□□□□□ -1.41
SNX41YDR425W RSM7P47150 247 aa6.24□□□□□ -1.41
SNX41YDR425W YAH1Q12184 172 aaKnown RBP6.22□□□□□ -1.41
SNX41YDR425W SSP1P38871 571 aa6.21□□□□□ -1.42
SNX41YDR425W YLR271WQ06152 274 aa6.2□□□□□ -1.42
SNX41YDR425W TIF4632P39936 914 aaKnown RBP6.18□□□□□ -1.42
SNX41YDR425W EPS1P40557 701 aa6.17□□□□□ -1.42
SNX41YDR425W SLX5P32828 619 aaKnown RBP6.17□□□□□ -1.42
SNX41YDR425W BDF1P35817 686 aa6.15□□□□□ -1.43
SNX41YDR425W AI2P03876 854 aa6.14□□□□□ -1.43
SNX41YDR425W TGL3P40308 642 aa6.13□□□□□ -1.43
SNX41YDR425W ARP8Q12386 881 aaKnown RBP RIP-Chip data6.13□□□□□ -1.43not detected
SNX41YDR425W BBC1P47068 1157 aa6.12□□□□□ -1.43
SNX41YDR425W PSD2P53037 1138 aaKnown RBP6.09□□□□□ -1.43
SNX41YDR425W MGA2P40578 1113 aa6.03□□□□□ -1.44
SNX41YDR425W CST9Q06032 482 aa5.98□□□□□ -1.45
SNX41YDR425W NSR1P27476 414 aaKnown RBP RIP-Chip data5.97□□□□□ -1.45not detected
SNX41YDR425W MRM1P25270 412 aa5.92□□□□□ -1.46
SNX41YDR425W MST1P07236 462 aa5.9□□□□□ -1.46
SNX41YDR425W YAP5P40574 245 aa5.87□□□□□ -1.47
SNX41YDR425W YOR238WQ08634 303 aa5.85□□□□□ -1.47
SNX41YDR425W RTG3P38165 486 aa5.85□□□□□ -1.47
SNX41YDR425W VPS29P38759 282 aa5.83□□□□□ -1.48
SNX41YDR425W YBL029C-AQ3E756 94 aa5.81□□□□□ -1.48
SNX41YDR425W RCR1P38212 213 aa5.81□□□□□ -1.48
SNX41YDR425W YMR1P47147 688 aaKnown RBP RIP-Chip data5.79□□□□□ -1.48not detected
SNX41YDR425W RAM2P29703 316 aa5.75□□□□□ -1.49
SNX41YDR425W STS1P38637 319 aa5.75□□□□□ -1.49
SNX41YDR425W DBP1P24784 617 aaKnown RBP5.74□□□□□ -1.49
SNX41YDR425W YJL171CP46992 396 aa5.73□□□□□ -1.49
SNX41YDR425W MAK11P20484 414 aaKnown RBP5.71□□□□□ -1.5
SNX41YDR425W PIB1Q06651 286 aa5.7□□□□□ -1.5
SNX41YDR425W VNX1P42839 908 aa5.69□□□□□ -1.5
SNX41YDR425W YFR006WP43590 535 aa5.69□□□□□ -1.5
SNX41YDR425W GTT3P39996 337 aa5.68□□□□□ -1.5
SNX41YDR425W VMA1P17255 1071 aaKnown RBP5.67□□□□□ -1.5
SNX41YDR425W SPP1Q03012 353 aa5.67□□□□□ -1.5
SNX41YDR425W SAM3Q08986 587 aa5.66□□□□□ -1.5
SNX41YDR425W AIR2Q12476 344 aaKnown RBP5.65□□□□□ -1.5
SNX41YDR425W MSB4Q12317 492 aa5.64□□□□□ -1.51
SNX41YDR425W WSC3Q12215 556 aa5.62□□□□□ -1.51
SNX41YDR425W YOL036WQ08206 761 aa5.61□□□□□ -1.51
SNX41YDR425W NOP53Q12080 455 aaKnown RBP5.61□□□□□ -1.51
SNX41YDR425W COQ8P27697 501 aa5.6□□□□□ -1.51
SNX41YDR425W FKH1P40466 484 aa5.6□□□□□ -1.51
SNX41YDR425W EDS1P38073 919 aa5.6□□□□□ -1.51
SNX41YDR425W TIF11P38912 153 aaKnown RBP5.6□□□□□ -1.51
SNX41YDR425W ABP1P15891 592 aaKnown RBP5.57□□□□□ -1.52
SNX41YDR425W EAP1P36041 632 aaKnown RBP5.57□□□□□ -1.52
SNX41YDR425W PTC3P34221 468 aaKnown RBP5.56□□□□□ -1.52
SNX41YDR425W MIF2P35201 549 aa5.56□□□□□ -1.52
SNX41YDR425W SET4P42948 560 aa5.56□□□□□ -1.52
SNX41YDR425W IOC2Q12072 812 aa5.56□□□□□ -1.52
SNX41YDR425W GYP5Q12344 894 aa5.55□□□□□ -1.52
SNX41YDR425W SET1P38827 1080 aaKnown RBP5.54□□□□□ -1.52
SNX41YDR425W ULI1P43604 169 aa5.54□□□□□ -1.52
SNX41YDR425W DMA1P38823 416 aa5.54□□□□□ -1.52
SNX41YDR425W BMT6Q12291 365 aa5.54□□□□□ -1.52
SNX41YDR425W GRE2Q12068 342 aaKnown RBP5.53□□□□□ -1.52
SNX41YDR425W TRP5P00931 707 aaKnown RBP5.51□□□□□ -1.53
SNX41YDR425W GUT1P32190 709 aa5.51□□□□□ -1.53
SNX41YDR425W RQC2Q12532 1038 aaKnown RBP5.5□□□□□ -1.53
SNX41YDR425W HTA1P04911 132 aaKnown RBP5.49□□□□□ -1.53
Retrieved 100 of 5,963 RNA–protein pairs in 11.1 ms