RNA–Protein interactions for RNA: YCR073C

SSK22, Transcript of MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway, yeastyeast

Gene SSK22, Length 3,996 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSK22YCR073C SPA2P23201 1466 aaKnown RBP10.17□□□□□ -0.78
SSK22YCR073C SGS1P35187 1447 aa9.96□□□□□ -0.81
SSK22YCR073C SSN2P38931 1420 aa9.92□□□□□ -0.82
SSK22YCR073C INO80P53115 1489 aa9.76□□□□□ -0.85
SSK22YCR073C TY1B-DR4Q07793 1604 aa9.7□□□□□ -0.86
SSK22YCR073C TCB3Q03640 1545 aaKnown RBP9.42□□□□□ -0.9
SSK22YCR073C SKI3P17883 1432 aaKnown RBP9.38□□□□□ -0.91
SSK22YCR073C HSL1P34244 1518 aa9.36□□□□□ -0.91
SSK22YCR073C CHD1P32657 1468 aa9.32□□□□□ -0.92
SSK22YCR073C SIN3P22579 1536 aa9.25□□□□□ -0.93
SSK22YCR073C HIR3P47171 1648 aa9.23□□□□□ -0.93
SSK22YCR073C SSK2P53599 1579 aa9.18□□□□□ -0.94
SSK22YCR073C THO2P53552 1597 aaKnown RBP9.15□□□□□ -0.95
SSK22YCR073C XRN1P22147 1528 aaKnown RBP9.14□□□□□ -0.95
SSK22YCR073C SPT6P23615 1451 aaKnown RBP9.11□□□□□ -0.95
SSK22YCR073C MMS22Q06164 1454 aa9.11□□□□□ -0.95
SSK22YCR073C ESP1Q03018 1630 aa9.09□□□□□ -0.95
SSK22YCR073C REV3P14284 1504 aa9.07□□□□□ -0.96
SSK22YCR073C NUP170P38181 1502 aa9.05□□□□□ -0.96
SSK22YCR073C MON2P48563 1636 aaPredicted RBP9.04□□□□□ -0.96
SSK22YCR073C UFD4P33202 1483 aa9.01□□□□□ -0.97
SSK22YCR073C DRS1P32892 752 aaKnown RBP8.97□□□□□ -0.97
SSK22YCR073C SWR1Q05471 1514 aa8.96□□□□□ -0.98
SSK22YCR073C STU1P38198 1513 aa8.93□□□□□ -0.98
SSK22YCR073C TY1B-DR3Q99231 1755 aa8.93□□□□□ -0.98
SSK22YCR073C ATG2P53855 1592 aa8.91□□□□□ -0.98
SSK22YCR073C POL1P13382 1468 aa8.88□□□□□ -0.99
SSK22YCR073C MYO2P19524 1574 aaKnown RBP8.88□□□□□ -0.99
SSK22YCR073C TY2B-LR1P0C2J3 1770 aa8.88□□□□□ -0.99
SSK22YCR073C TY2B-FP0CX63 1770 aa8.88□□□□□ -0.99
SSK22YCR073C TY2B-GR2P0CX64 1770 aa8.88□□□□□ -0.99
SSK22YCR073C TY2B-CP25384 1770 aa8.88□□□□□ -0.99
SSK22YCR073C TY2B-DR2Q03494 1770 aa8.88□□□□□ -0.99
SSK22YCR073C TY1B-DR1Q03855 1755 aa8.88□□□□□ -0.99
SSK22YCR073C TY2B-DR3Q07791 1770 aaKnown RBP8.88□□□□□ -0.99
SSK22YCR073C TY2B-OR1Q12113 1770 aa8.88□□□□□ -0.99
SSK22YCR073C TY2B-DR1Q12472 1770 aa8.88□□□□□ -0.99
SSK22YCR073C TY2B-OR2Q12501 1770 aa8.88□□□□□ -0.99
SSK22YCR073C ECM5Q03214 1411 aa8.86□□□□□ -0.99
SSK22YCR073C BPT1P14772 1559 aa8.84□□□□□ -0.99
SSK22YCR073C TY2B-BQ12491 1770 aa8.82□□□□□ -1
SSK22YCR073C MLP2P40457 1679 aa8.8□□□□□ -1
SSK22YCR073C TRM732Q03496 1420 aa8.8□□□□□ -1
SSK22YCR073C PEP1P32319 1579 aa8.75□□□□□ -1.01
SSK22YCR073C SCC2Q04002 1493 aa8.74□□□□□ -1.01
SSK22YCR073C YPK9Q12697 1472 aa8.74□□□□□ -1.01
SSK22YCR073C TY1B-HO13535 1793 aa8.72□□□□□ -1.01
SSK22YCR073C TY1B-DR5P0C2I2 1755 aa8.72□□□□□ -1.01
SSK22YCR073C TY1B-DR6P0C2I3 1755 aa8.72□□□□□ -1.01
SSK22YCR073C TY1B-LR2P0C2I5 1755 aa8.72□□□□□ -1.01
SSK22YCR073C TY1B-LR3P0C2I6 1755 aaKnown RBP8.72□□□□□ -1.01
SSK22YCR073C TY1B-PR1P0C2I9 1755 aaKnown RBP8.72□□□□□ -1.01
SSK22YCR073C TY1B-PR2P0C2J0 1756 aa8.72□□□□□ -1.01
SSK22YCR073C TY1B-PR3P0C2J1 1755 aaKnown RBP8.72□□□□□ -1.01
SSK22YCR073C TY1B-JR1P47098 1755 aa8.72□□□□□ -1.01
SSK22YCR073C TY1B-ML2Q03434 1755 aaKnown RBP8.72□□□□□ -1.01
SSK22YCR073C TY1B-ER1Q03612 1755 aa8.72□□□□□ -1.01
SSK22YCR073C TY1B-ML1Q04711 1755 aaKnown RBP8.72□□□□□ -1.01
SSK22YCR073C TY1B-GR2Q12269 1755 aa8.72□□□□□ -1.01
SSK22YCR073C TY1B-OLQ12273 1755 aa8.72□□□□□ -1.01
SSK22YCR073C TY1B-PLQ12414 1755 aaKnown RBP8.72□□□□□ -1.01
SSK22YCR073C ULS1Q08562 1619 aa8.72□□□□□ -1.01
SSK22YCR073C YOR1P53049 1477 aa8.68□□□□□ -1.02
SSK22YCR073C TY3B-GQ99315 1547 aa8.68□□□□□ -1.02
SSK22YCR073C TY1B-BRQ12193 1756 aa8.67□□□□□ -1.02
SSK22YCR073C TY1B-GR3Q12316 1755 aa8.67□□□□□ -1.02
SSK22YCR073C TY1B-ORQ92393 1755 aa8.67□□□□□ -1.02
SSK22YCR073C DNA2P38859 1522 aa8.66□□□□□ -1.02
SSK22YCR073C NSR1P27476 414 aaKnown RBP RIP-Chip data8.66□□□□□ -1.02not detected
SSK22YCR073C RKR1Q04781 1562 aa8.66□□□□□ -1.02
SSK22YCR073C ESC1Q03661 1658 aaKnown RBP8.65□□□□□ -1.02
SSK22YCR073C MYO4P32492 1471 aa8.64□□□□□ -1.03
SSK22YCR073C YBT1P32386 1661 aa8.62□□□□□ -1.03
SSK22YCR073C YCF1P39109 1515 aaKnown RBP8.62□□□□□ -1.03
SSK22YCR073C TY1B-JR2P47100 1755 aaKnown RBP8.58□□□□□ -1.04
SSK22YCR073C TY1B-ER2Q03619 1755 aa8.58□□□□□ -1.04
SSK22YCR073C TY1B-MR1Q04214 1755 aa8.58□□□□□ -1.04
SSK22YCR073C TY1B-MR2Q04670 1755 aaKnown RBP8.58□□□□□ -1.04
SSK22YCR073C TY1B-LR1Q12088 1755 aaKnown RBP8.58□□□□□ -1.04
SSK22YCR073C TY1B-NL1Q12112 1755 aa8.58□□□□□ -1.04
SSK22YCR073C TY1B-GR1Q12141 1755 aa8.58□□□□□ -1.04
SSK22YCR073C TY1B-BLQ12490 1755 aa8.58□□□□□ -1.04
SSK22YCR073C RPO31P04051 1460 aa8.57□□□□□ -1.04
SSK22YCR073C BUD4P47136 1447 aa8.56□□□□□ -1.04
SSK22YCR073C SNQ2P32568 1501 aaKnown RBP8.56□□□□□ -1.04
SSK22YCR073C RSE1Q04693 1361 aaKnown RBP8.56□□□□□ -1.04
SSK22YCR073C KOG1P38873 1557 aa8.55□□□□□ -1.04
SSK22YCR073C PDR10P51533 1564 aa8.54□□□□□ -1.04
SSK22YCR073C SPP41P38904 1435 aa8.54□□□□□ -1.04
SSK22YCR073C TAF2P23255 1407 aa8.51□□□□□ -1.05
SSK22YCR073C IKI3Q06706 1349 aaKnown RBP8.5□□□□□ -1.05
SSK22YCR073C YTA7P40340 1379 aa8.49□□□□□ -1.05
SSK22YCR073C PDR15Q04182 1529 aaKnown RBP8.48□□□□□ -1.05
SSK22YCR073C SMC4Q12267 1418 aa8.47□□□□□ -1.05
SSK22YCR073C SSM4P40318 1319 aa8.47□□□□□ -1.05
SSK22YCR073C TOP2P06786 1428 aaKnown RBP8.43□□□□□ -1.06
SSK22YCR073C IRC20Q06554 1556 aa8.42□□□□□ -1.06
SSK22YCR073C NOP2P40991 618 aaKnown RBP8.39□□□□□ -1.07
SSK22YCR073C PDR5P33302 1511 aaKnown RBP8.38□□□□□ -1.07
SSK22YCR073C STH1P32597 1359 aa8.36□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms