RNA–Protein interactions for RNA: YBR165W

UBS1, Transcript of Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p, yeast

Gene UBS1, Length 834 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBS1	YBR165W	MTC1	P47018	478 aa	Known RBP	17.59	■□□□□ 0.41
UBS1	YBR165W	DRS1	P32892	752 aa	Known RBP	17.06	■□□□□ 0.32
UBS1	YBR165W	FAP1	P53971	965 aa		14.96	□□□□□ -0.01
UBS1	YBR165W	DIP2	Q12220	943 aa	Predicted RBP	14.74	□□□□□ -0.05
UBS1	YBR165W	BFR2	Q06631	534 aa	Known RBP	14.51	□□□□□ -0.09
UBS1	YBR165W	PRI1	P10363	409 aa		14.44	□□□□□ -0.1
UBS1	YBR165W	AVT3	P36062	692 aa		14.43	□□□□□ -0.1
UBS1	YBR165W	ISW2	Q08773	1120 aa		14.42	□□□□□ -0.1
UBS1	YBR165W	AAD16	Q02895	342 aa		14.26	□□□□□ -0.13
UBS1	YBR165W	RPG1	P38249	964 aa	Known RBP	14.22	□□□□□ -0.13
UBS1	YBR165W	RSE1	Q04693	1361 aa	Known RBP	14.06	□□□□□ -0.16
UBS1	YBR165W	PRY3	P47033	881 aa		14.03	□□□□□ -0.16
UBS1	YBR165W	TSR3	Q12094	313 aa	Known RBP	13.63	□□□□□ -0.23
UBS1	YBR165W	RPL17A	P05740	184 aa	Known RBP	13.53	□□□□□ -0.24
UBS1	YBR165W	RPL17B	P46990	184 aa	Known RBP	13.53	□□□□□ -0.24
UBS1	YBR165W	REB1	P21538	810 aa		13.41	□□□□□ -0.26
UBS1	YBR165W	YCK3	P39962	524 aa		13.35	□□□□□ -0.27
UBS1	YBR165W	TFA1	P36100	482 aa		13.34	□□□□□ -0.27
UBS1	YBR165W	HAA1	Q12753	694 aa	Known RBP	13.29	□□□□□ -0.28
UBS1	YBR165W	MRPL32	P25348	183 aa		13.12	□□□□□ -0.31
UBS1	YBR165W	SPT21	P35209	758 aa		13.07	□□□□□ -0.32
UBS1	YBR165W	RIM101	P33400	625 aa		12.77	□□□□□ -0.37
UBS1	YBR165W	YKR023W	P36119	530 aa	Known RBP	12.75	□□□□□ -0.37
UBS1	YBR165W	CDC27	P38042	758 aa		12.59	□□□□□ -0.39
UBS1	YBR165W	TFC8	Q12308	588 aa		12.5	□□□□□ -0.41
UBS1	YBR165W	HO	P09932	586 aa		12.44	□□□□□ -0.42
UBS1	YBR165W	YGL015C	P33199	130 aa		12.42	□□□□□ -0.42
UBS1	YBR165W	DCD1	P06773	312 aa		12.34	□□□□□ -0.43
UBS1	YBR165W	OXP1	P28273	1286 aa		12.34	□□□□□ -0.43
UBS1	YBR165W	UBP10	P53874	792 aa	Predicted RBP	12.2	□□□□□ -0.46
UBS1	YBR165W	YIL055C	P40523	627 aa	Known RBP	12.13	□□□□□ -0.47
UBS1	YBR165W	MAP2	P38174	421 aa	Known RBP	12.12	□□□□□ -0.47
UBS1	YBR165W	BCH2	P36122	765 aa		12.1	□□□□□ -0.47
UBS1	YBR165W	PTP3	P40048	928 aa		12.07	□□□□□ -0.48
UBS1	YBR165W	YAH1	Q12184	172 aa	Known RBP	12	□□□□□ -0.49
UBS1	YBR165W	RSM7	P47150	247 aa		11.98	□□□□□ -0.49
UBS1	YBR165W	SCY1	P53009	804 aa		11.98	□□□□□ -0.49
UBS1	YBR165W	SSP1	P38871	571 aa		11.93	□□□□□ -0.5
UBS1	YBR165W	YLR271W	Q06152	274 aa		11.9	□□□□□ -0.5
UBS1	YBR165W	EPS1	P40557	701 aa		11.84	□□□□□ -0.51
UBS1	YBR165W	SLX5	P32828	619 aa	Known RBP	11.81	□□□□□ -0.52
UBS1	YBR165W	AI2	P03876	854 aa		11.8	□□□□□ -0.52
UBS1	YBR165W	BDF1	P35817	686 aa		11.79	□□□□□ -0.52
UBS1	YBR165W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.79	□□□□□ -0.52	not detected
UBS1	YBR165W	BBC1	P47068	1157 aa		11.76	□□□□□ -0.53
UBS1	YBR165W	PSD2	P53037	1138 aa	Known RBP	11.68	□□□□□ -0.54
UBS1	YBR165W	TIF4632	P39936	914 aa	Known RBP	11.67	□□□□□ -0.54
UBS1	YBR165W	TGL3	P40308	642 aa		11.63	□□□□□ -0.55
UBS1	YBR165W	MGA2	P40578	1113 aa		11.59	□□□□□ -0.55
UBS1	YBR165W	CST9	Q06032	482 aa		11.49	□□□□□ -0.57
UBS1	YBR165W	MRM1	P25270	412 aa		11.39	□□□□□ -0.59
UBS1	YBR165W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.37	□□□□□ -0.59	not detected
UBS1	YBR165W	MST1	P07236	462 aa		11.26	□□□□□ -0.61
UBS1	YBR165W	YAP5	P40574	245 aa		11.24	□□□□□ -0.61
UBS1	YBR165W	RTG3	P38165	486 aa		11.23	□□□□□ -0.61
UBS1	YBR165W	YOR238W	Q08634	303 aa		11.21	□□□□□ -0.61
UBS1	YBR165W	VPS29	P38759	282 aa		11.17	□□□□□ -0.62
UBS1	YBR165W	RCR1	P38212	213 aa		11.15	□□□□□ -0.62
UBS1	YBR165W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	11.11	□□□□□ -0.63	not detected
UBS1	YBR165W	BUD31	P25337	157 aa	Predicted RBP	11.08	□□□□□ -0.64
UBS1	YBR165W	UBP9	P39967	754 aa		11.04	□□□□□ -0.64
UBS1	YBR165W	RAM2	P29703	316 aa		11.03	□□□□□ -0.64
UBS1	YBR165W	DBP1	P24784	617 aa	Known RBP	11.02	□□□□□ -0.65
UBS1	YBR165W	STS1	P38637	319 aa		11.02	□□□□□ -0.65
UBS1	YBR165W	PIB1	Q06651	286 aa		10.98	□□□□□ -0.65
UBS1	YBR165W	YFR006W	P43590	535 aa		10.95	□□□□□ -0.66
UBS1	YBR165W	MAK11	P20484	414 aa	Known RBP	10.94	□□□□□ -0.66
UBS1	YBR165W	GTT3	P39996	337 aa		10.91	□□□□□ -0.66
UBS1	YBR165W	VMA1	P17255	1071 aa	Known RBP	10.88	□□□□□ -0.67
UBS1	YBR165W	YBL029C-A	Q3E756	94 aa		10.87	□□□□□ -0.67
UBS1	YBR165W	VNX1	P42839	908 aa		10.84	□□□□□ -0.67
UBS1	YBR165W	SAM3	Q08986	587 aa		10.82	□□□□□ -0.68
UBS1	YBR165W	WSC3	Q12215	556 aa		10.8	□□□□□ -0.68
UBS1	YBR165W	COQ8	P27697	501 aa		10.76	□□□□□ -0.69
UBS1	YBR165W	MSB4	Q12317	492 aa		10.76	□□□□□ -0.69
UBS1	YBR165W	MIF2	P35201	549 aa		10.74	□□□□□ -0.69
UBS1	YBR165W	YOL036W	Q08206	761 aa		10.74	□□□□□ -0.69
UBS1	YBR165W	EDS1	P38073	919 aa		10.72	□□□□□ -0.69
UBS1	YBR165W	DMA1	P38823	416 aa		10.72	□□□□□ -0.69
UBS1	YBR165W	SPP1	Q03012	353 aa		10.72	□□□□□ -0.69
UBS1	YBR165W	NOP53	Q12080	455 aa	Known RBP	10.71	□□□□□ -0.69
UBS1	YBR165W	TIF11	P38912	153 aa	Known RBP	10.7	□□□□□ -0.7
UBS1	YBR165W	RQC2	Q12532	1038 aa	Known RBP	10.69	□□□□□ -0.7
UBS1	YBR165W	SET4	P42948	560 aa		10.68	□□□□□ -0.7
UBS1	YBR165W	PTC3	P34221	468 aa	Known RBP	10.67	□□□□□ -0.7
UBS1	YBR165W	SET1	P38827	1080 aa	Known RBP	10.67	□□□□□ -0.7
UBS1	YBR165W	EAP1	P36041	632 aa	Known RBP	10.66	□□□□□ -0.7
UBS1	YBR165W	ABP1	P15891	592 aa	Known RBP	10.65	□□□□□ -0.7
UBS1	YBR165W	GYP5	Q12344	894 aa		10.65	□□□□□ -0.7
UBS1	YBR165W	ULI1	P43604	169 aa		10.61	□□□□□ -0.71
UBS1	YBR165W	GRE2	Q12068	342 aa	Known RBP	10.61	□□□□□ -0.71
UBS1	YBR165W	IOC2	Q12072	812 aa		10.6	□□□□□ -0.71
UBS1	YBR165W	SIS1	P25294	352 aa	Known RBP	10.57	□□□□□ -0.72
UBS1	YBR165W	GUT1	P32190	709 aa		10.57	□□□□□ -0.72
UBS1	YBR165W	TRP5	P00931	707 aa	Known RBP	10.56	□□□□□ -0.72
UBS1	YBR165W	ATH1	P48016	1211 aa		10.56	□□□□□ -0.72
UBS1	YBR165W	HTA1	P04911	132 aa	Known RBP	10.53	□□□□□ -0.72
UBS1	YBR165W	HTA2	P04912	132 aa		10.53	□□□□□ -0.72
UBS1	YBR165W	DCW1	P36091	449 aa		10.52	□□□□□ -0.73
UBS1	YBR165W	IFH1	P39520	1085 aa		10.51	□□□□□ -0.73

Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms