RNA–Protein interactions for RNA: YBL058W

SHP1, Transcript of UBX (ubiquitin regulatory X) domain-containing protein, yeastyeast

Gene SHP1, Length 1,272 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHP1YBL058W MON2P48563 1636 aaPredicted RBP12.73□□□□□ -0.37
SHP1YBL058W INO80P53115 1489 aa12.66□□□□□ -0.38
SHP1YBL058W DNA2P38859 1522 aa12.09□□□□□ -0.47
SHP1YBL058W SWR1Q05471 1514 aa12.06□□□□□ -0.48
SHP1YBL058W TCB3Q03640 1545 aaKnown RBP11.96□□□□□ -0.5
SHP1YBL058W TY1B-DR4Q07793 1604 aa11.93□□□□□ -0.5
SHP1YBL058W KOG1P38873 1557 aa11.93□□□□□ -0.5
SHP1YBL058W FAP1P53971 965 aa11.83□□□□□ -0.52
SHP1YBL058W SGS1P35187 1447 aa11.69□□□□□ -0.54
SHP1YBL058W RSE1Q04693 1361 aaKnown RBP11.66□□□□□ -0.54
SHP1YBL058W DRS1P32892 752 aaKnown RBP11.51□□□□□ -0.57
SHP1YBL058W MTC1P47018 478 aaKnown RBP11.5□□□□□ -0.57
SHP1YBL058W HSL1P34244 1518 aa11.5□□□□□ -0.57
SHP1YBL058W SPT6P23615 1451 aaKnown RBP11.47□□□□□ -0.57
SHP1YBL058W SPA2P23201 1466 aaKnown RBP11.35□□□□□ -0.59
SHP1YBL058W ECM5Q03214 1411 aa11.26□□□□□ -0.61
SHP1YBL058W HIR3P47171 1648 aa11.24□□□□□ -0.61
SHP1YBL058W PRY3P47033 881 aa11.23□□□□□ -0.61
SHP1YBL058W THO2P53552 1597 aaKnown RBP11.2□□□□□ -0.62
SHP1YBL058W BUD4P47136 1447 aa11.15□□□□□ -0.62
SHP1YBL058W MDS3P53094 1487 aa11.07□□□□□ -0.64
SHP1YBL058W XRN1P22147 1528 aaKnown RBP11.01□□□□□ -0.65
SHP1YBL058W PEP1P32319 1579 aa10.94□□□□□ -0.66
SHP1YBL058W REV3P14284 1504 aa10.89□□□□□ -0.67
SHP1YBL058W ATG2P53855 1592 aa10.86□□□□□ -0.67
SHP1YBL058W YCK3P39962 524 aa10.79□□□□□ -0.68
SHP1YBL058W BPT1P14772 1559 aa10.78□□□□□ -0.68
SHP1YBL058W SSN2P38931 1420 aa10.74□□□□□ -0.69
SHP1YBL058W TAF2P23255 1407 aa10.71□□□□□ -0.69
SHP1YBL058W SKI3P17883 1432 aaKnown RBP10.68□□□□□ -0.7
SHP1YBL058W SSK2P53599 1579 aa10.68□□□□□ -0.7
SHP1YBL058W SIN3P22579 1536 aa10.66□□□□□ -0.7
SHP1YBL058W AAD16Q02895 342 aa10.62□□□□□ -0.71
SHP1YBL058W YCF1P39109 1515 aaKnown RBP10.59□□□□□ -0.71
SHP1YBL058W PRI1P10363 409 aa10.53□□□□□ -0.72
SHP1YBL058W ESP1Q03018 1630 aa10.53□□□□□ -0.72
SHP1YBL058W HAA1Q12753 694 aaKnown RBP10.49□□□□□ -0.73
SHP1YBL058W UFD4P33202 1483 aa10.49□□□□□ -0.73
SHP1YBL058W SCC2Q04002 1493 aa10.41□□□□□ -0.74
SHP1YBL058W YPK9Q12697 1472 aa10.4□□□□□ -0.74
SHP1YBL058W MYO2P19524 1574 aaKnown RBP10.36□□□□□ -0.75
SHP1YBL058W MET5P47169 1442 aa10.35□□□□□ -0.75
SHP1YBL058W RPO31P04051 1460 aa10.34□□□□□ -0.75
SHP1YBL058W CDC25P04821 1589 aa10.33□□□□□ -0.76
SHP1YBL058W DNF1P32660 1571 aa10.32□□□□□ -0.76
SHP1YBL058W CHD1P32657 1468 aa10.32□□□□□ -0.76
SHP1YBL058W TY2B-LR1P0C2J3 1770 aa10.3□□□□□ -0.76
SHP1YBL058W TY2B-FP0CX63 1770 aa10.3□□□□□ -0.76
SHP1YBL058W TY2B-GR2P0CX64 1770 aa10.3□□□□□ -0.76
SHP1YBL058W TY2B-CP25384 1770 aa10.3□□□□□ -0.76
SHP1YBL058W TY2B-DR2Q03494 1770 aa10.3□□□□□ -0.76
SHP1YBL058W TY1B-DR1Q03855 1755 aa10.3□□□□□ -0.76
SHP1YBL058W TY2B-DR3Q07791 1770 aaKnown RBP10.3□□□□□ -0.76
SHP1YBL058W TY2B-OR1Q12113 1770 aa10.3□□□□□ -0.76
SHP1YBL058W TY2B-DR1Q12472 1770 aa10.3□□□□□ -0.76
SHP1YBL058W TY2B-OR2Q12501 1770 aa10.3□□□□□ -0.76
SHP1YBL058W ESC1Q03661 1658 aaKnown RBP10.3□□□□□ -0.76
SHP1YBL058W TY1B-BRQ12193 1756 aa10.29□□□□□ -0.76
SHP1YBL058W TY1B-GR3Q12316 1755 aa10.29□□□□□ -0.76
SHP1YBL058W TY1B-ORQ92393 1755 aa10.29□□□□□ -0.76
SHP1YBL058W RQC2Q12532 1038 aaKnown RBP10.26□□□□□ -0.77
SHP1YBL058W MIF2P35201 549 aa10.25□□□□□ -0.77
SHP1YBL058W LTE1P07866 1435 aa10.24□□□□□ -0.77
SHP1YBL058W PAN1P32521 1480 aa10.22□□□□□ -0.77
SHP1YBL058W RKR1Q04781 1562 aa10.22□□□□□ -0.77
SHP1YBL058W RPA190P10964 1664 aaKnown RBP10.19□□□□□ -0.78
SHP1YBL058W BNI1P41832 1953 aa10.17□□□□□ -0.78
SHP1YBL058W TY1B-HO13535 1793 aa10.17□□□□□ -0.78
SHP1YBL058W TY1B-DR5P0C2I2 1755 aa10.17□□□□□ -0.78
SHP1YBL058W TY1B-DR6P0C2I3 1755 aa10.17□□□□□ -0.78
SHP1YBL058W TY1B-LR2P0C2I5 1755 aa10.17□□□□□ -0.78
SHP1YBL058W TY1B-LR3P0C2I6 1755 aaKnown RBP10.17□□□□□ -0.78
SHP1YBL058W TY1B-PR1P0C2I9 1755 aaKnown RBP10.17□□□□□ -0.78
SHP1YBL058W TY1B-PR2P0C2J0 1756 aa10.17□□□□□ -0.78
SHP1YBL058W TY1B-PR3P0C2J1 1755 aaKnown RBP10.17□□□□□ -0.78
SHP1YBL058W TY1B-JR1P47098 1755 aa10.17□□□□□ -0.78
SHP1YBL058W TY1B-ML2Q03434 1755 aaKnown RBP10.17□□□□□ -0.78
SHP1YBL058W TY1B-ER1Q03612 1755 aa10.17□□□□□ -0.78
SHP1YBL058W TY1B-ML1Q04711 1755 aaKnown RBP10.17□□□□□ -0.78
SHP1YBL058W TY1B-GR2Q12269 1755 aa10.17□□□□□ -0.78
SHP1YBL058W TY1B-OLQ12273 1755 aa10.17□□□□□ -0.78
SHP1YBL058W TY1B-PLQ12414 1755 aaKnown RBP10.17□□□□□ -0.78
SHP1YBL058W TY2B-BQ12491 1770 aa10.17□□□□□ -0.78
SHP1YBL058W TOP2P06786 1428 aaKnown RBP10.16□□□□□ -0.78
SHP1YBL058W TY1B-DR3Q99231 1755 aa10.14□□□□□ -0.79
SHP1YBL058W BFR2Q06631 534 aaKnown RBP10.1□□□□□ -0.79
SHP1YBL058W GEA2P39993 1459 aaKnown RBP10.1□□□□□ -0.79
SHP1YBL058W MMS22Q06164 1454 aa10.09□□□□□ -0.79
SHP1YBL058W ITT1Q04638 464 aa10.05□□□□□ -0.8
SHP1YBL058W TRM732Q03496 1420 aa10.04□□□□□ -0.8
SHP1YBL058W YRF1-1P0CX20 1796 aa10.01□□□□□ -0.81
SHP1YBL058W YRF1-5P0CX21 1796 aa10.01□□□□□ -0.81
SHP1YBL058W YRF1-8P0CX22 1796 aa10.01□□□□□ -0.81
SHP1YBL058W POL1P13382 1468 aa10.01□□□□□ -0.81
SHP1YBL058W SMC4Q12267 1418 aa9.97□□□□□ -0.81
SHP1YBL058W TY1B-JR2P47100 1755 aaKnown RBP9.96□□□□□ -0.81
SHP1YBL058W TY1B-ER2Q03619 1755 aa9.96□□□□□ -0.81
SHP1YBL058W TY1B-MR1Q04214 1755 aa9.96□□□□□ -0.81
SHP1YBL058W TY1B-MR2Q04670 1755 aaKnown RBP9.96□□□□□ -0.81
SHP1YBL058W TY1B-LR1Q12088 1755 aaKnown RBP9.96□□□□□ -0.81
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms