RNA–Protein interactions for RNA: YAL030W

SNC1, Transcript of Vesicle membrane receptor protein (v-SNARE), yeastyeast

Gene SNC1, Length 354 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytosol, Endoplasmic reticulum, Mitochondria .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNC1YAL030W MTC1P47018 478 aaKnown RBP5.96□□□□□ -1.46
SNC1YAL030W DRS1P32892 752 aaKnown RBP5.81□□□□□ -1.48
SNC1YAL030W FAP1P53971 965 aa5.41□□□□□ -1.54
SNC1YAL030W BFR2Q06631 534 aaKnown RBP5.14□□□□□ -1.59
SNC1YAL030W PRY3P47033 881 aa5.08□□□□□ -1.6
SNC1YAL030W TFA1P36100 482 aa5.06□□□□□ -1.6
SNC1YAL030W PRI1P10363 409 aa4.99□□□□□ -1.61
SNC1YAL030W AAD16Q02895 342 aa4.98□□□□□ -1.61
SNC1YAL030W ISW2Q08773 1120 aa4.97□□□□□ -1.61
SNC1YAL030W DIP2Q12220 943 aaPredicted RBP4.96□□□□□ -1.62
SNC1YAL030W RPG1P38249 964 aaKnown RBP4.92□□□□□ -1.62
SNC1YAL030W AVT3P36062 692 aa4.9□□□□□ -1.63
SNC1YAL030W HAA1Q12753 694 aaKnown RBP4.78□□□□□ -1.64
SNC1YAL030W RSE1Q04693 1361 aaKnown RBP4.78□□□□□ -1.64
SNC1YAL030W YCK3P39962 524 aa4.77□□□□□ -1.65
SNC1YAL030W TSR3Q12094 313 aaKnown RBP4.77□□□□□ -1.65
SNC1YAL030W REB1P21538 810 aa4.63□□□□□ -1.67
SNC1YAL030W RPL17AP05740 184 aaKnown RBP4.62□□□□□ -1.67
SNC1YAL030W RPL17BP46990 184 aaKnown RBP4.62□□□□□ -1.67
SNC1YAL030W MRPL32P25348 183 aa4.6□□□□□ -1.67
SNC1YAL030W RQC2Q12532 1038 aaKnown RBP4.59□□□□□ -1.67
SNC1YAL030W BUD31P25337 157 aaPredicted RBP4.4□□□□□ -1.71
SNC1YAL030W YGL015CP33199 130 aa4.38□□□□□ -1.71
SNC1YAL030W SPT21P35209 758 aa4.33□□□□□ -1.72
SNC1YAL030W YKR023WP36119 530 aaKnown RBP4.32□□□□□ -1.72
SNC1YAL030W CDC27P38042 758 aa4.31□□□□□ -1.72
SNC1YAL030W HOP09932 586 aa4.28□□□□□ -1.72
SNC1YAL030W DCD1P06773 312 aa4.26□□□□□ -1.73
SNC1YAL030W TFC8Q12308 588 aa4.24□□□□□ -1.73
SNC1YAL030W RIM101P33400 625 aa4.23□□□□□ -1.73
SNC1YAL030W DMA1P38823 416 aa4.2□□□□□ -1.74
SNC1YAL030W MAP2P38174 421 aaKnown RBP4.19□□□□□ -1.74
SNC1YAL030W PTP3P40048 928 aa4.17□□□□□ -1.74
SNC1YAL030W UBP10P53874 792 aaPredicted RBP4.16□□□□□ -1.74
SNC1YAL030W SSP1P38871 571 aa4.14□□□□□ -1.75
SNC1YAL030W YIL055CP40523 627 aaKnown RBP4.14□□□□□ -1.75
SNC1YAL030W SCY1P53009 804 aa4.14□□□□□ -1.75
SNC1YAL030W BCH2P36122 765 aa4.11□□□□□ -1.75
SNC1YAL030W OXP1P28273 1286 aa4.1□□□□□ -1.75
SNC1YAL030W SLX5P32828 619 aaKnown RBP4.08□□□□□ -1.76
SNC1YAL030W TIF4632P39936 914 aaKnown RBP4.07□□□□□ -1.76
SNC1YAL030W TAF7Q05021 590 aa4.07□□□□□ -1.76
SNC1YAL030W YAH1Q12184 172 aaKnown RBP4.07□□□□□ -1.76
SNC1YAL030W ARP8Q12386 881 aaKnown RBP RIP-Chip data4.07□□□□□ -1.76not detected
SNC1YAL030W SIS1P25294 352 aaKnown RBP4.03□□□□□ -1.76
SNC1YAL030W LEO1P38439 464 aa4.01□□□□□ -1.77
SNC1YAL030W TGL3P40308 642 aa4.01□□□□□ -1.77
SNC1YAL030W EPS1P40557 701 aa4.01□□□□□ -1.77
SNC1YAL030W RSM7P47150 247 aa4.01□□□□□ -1.77
SNC1YAL030W BDF1P35817 686 aa4□□□□□ -1.77
SNC1YAL030W BBC1P47068 1157 aa4□□□□□ -1.77
SNC1YAL030W YLR271WQ06152 274 aa4□□□□□ -1.77
SNC1YAL030W MGA2P40578 1113 aa3.98□□□□□ -1.77
SNC1YAL030W SAS10Q12136 610 aaPredicted RBP3.98□□□□□ -1.77
SNC1YAL030W AI2P03876 854 aa3.97□□□□□ -1.77
SNC1YAL030W LEU3P08638 886 aa3.96□□□□□ -1.78
SNC1YAL030W UBP9P39967 754 aa3.91□□□□□ -1.78
SNC1YAL030W PSD2P53037 1138 aaKnown RBP3.9□□□□□ -1.79
SNC1YAL030W CST9Q06032 482 aa3.88□□□□□ -1.79
SNC1YAL030W YOR238WQ08634 303 aa3.86□□□□□ -1.79
SNC1YAL030W MRM1P25270 412 aa3.84□□□□□ -1.79
SNC1YAL030W YAP5P40574 245 aa3.83□□□□□ -1.8
SNC1YAL030W YPR148CQ06523 435 aa3.81□□□□□ -1.8
SNC1YAL030W RAM2P29703 316 aa3.8□□□□□ -1.8
SNC1YAL030W RPN1P38764 993 aaKnown RBP3.8□□□□□ -1.8
SNC1YAL030W IFH1P39520 1085 aa3.8□□□□□ -1.8
SNC1YAL030W CKB1P43639 278 aa3.8□□□□□ -1.8
SNC1YAL030W PIB1Q06651 286 aa3.8□□□□□ -1.8
SNC1YAL030W MST1P07236 462 aa3.79□□□□□ -1.8
SNC1YAL030W GTT3P39996 337 aa3.79□□□□□ -1.8
SNC1YAL030W WSC3Q12215 556 aa3.79□□□□□ -1.8
SNC1YAL030W YBL029C-AQ3E756 94 aa3.79□□□□□ -1.8
SNC1YAL030W NSR1P27476 414 aaKnown RBP RIP-Chip data3.77□□□□□ -1.81 RIP-Chip
SNC1YAL030W SET1P38827 1080 aaKnown RBP3.77□□□□□ -1.81
SNC1YAL030W RTG3P38165 486 aa3.76□□□□□ -1.81
SNC1YAL030W MAK11P20484 414 aaKnown RBP3.75□□□□□ -1.81
SNC1YAL030W SPP1Q03012 353 aa3.75□□□□□ -1.81
SNC1YAL030W VNX1P42839 908 aa3.74□□□□□ -1.81
SNC1YAL030W DBP1P24784 617 aaKnown RBP3.73□□□□□ -1.81
SNC1YAL030W YFR006WP43590 535 aa3.73□□□□□ -1.81
SNC1YAL030W NOP53Q12080 455 aaKnown RBP3.73□□□□□ -1.81
SNC1YAL030W RCR1P38212 213 aa3.72□□□□□ -1.81
SNC1YAL030W YMR1P47147 688 aaKnown RBP RIP-Chip data3.72□□□□□ -1.81not detected
SNC1YAL030W VPS70P47161 811 aa3.72□□□□□ -1.81
SNC1YAL030W SPB4P25808 606 aaPredicted RBP3.71□□□□□ -1.82
SNC1YAL030W DSF2P38213 736 aa3.71□□□□□ -1.82
SNC1YAL030W VPS29P38759 282 aa3.71□□□□□ -1.82
SNC1YAL030W TIF11P38912 153 aaKnown RBP3.68□□□□□ -1.82
SNC1YAL030W YNR021WP53723 404 aaKnown RBP3.68□□□□□ -1.82
SNC1YAL030W PBS2P08018 668 aa3.67□□□□□ -1.82
SNC1YAL030W COQ8P27697 501 aa3.67□□□□□ -1.82
SNC1YAL030W STS1P38637 319 aa3.67□□□□□ -1.82
SNC1YAL030W SET4P42948 560 aa3.67□□□□□ -1.82
SNC1YAL030W ULI1P43604 169 aa3.67□□□□□ -1.82
SNC1YAL030W DMA2P53924 522 aa3.67□□□□□ -1.82
SNC1YAL030W YJL171CP46992 396 aa3.65□□□□□ -1.83
SNC1YAL030W AIM7Q12156 149 aa3.65□□□□□ -1.83
SNC1YAL030W VMA1P17255 1071 aaKnown RBP3.64□□□□□ -1.83
SNC1YAL030W MAK21Q12176 1025 aaKnown RBP3.64□□□□□ -1.83
SNC1YAL030W MAM3Q12296 706 aa3.64□□□□□ -1.83
Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms