RNA–Protein interactions for RNA: ENST00000638799.1

RTTN-213, Transcript of rotatin, humanhuman

TSL 5

Gene RTTN, Length 3,943 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTTN-213ENST00000638799 NISCHQ9Y2I1 1504 aa16.3■□□□□ 0.2
RTTN-213ENST00000638799 CCDC180Q9P1Z9 1646 aa14.06□□□□□ -0.16
RTTN-213ENST00000638799 ZCCHC6Q5VYS8 1495 aaKnown RBP13.71□□□□□ -0.21
RTTN-213ENST00000638799 SHROOM4Q9ULL8 1493 aa13.55□□□□□ -0.24
RTTN-213ENST00000638799 DCAF8L2P0C7V8 631 aa13.55□□□□□ -0.24
RTTN-213ENST00000638799 DCAF1Q9Y4B6 1507 aa13.39□□□□□ -0.27
RTTN-213ENST00000638799 ABCC9O60706 1549 aa13.32□□□□□ -0.28
RTTN-213ENST00000638799 MYO15BQ96JP2 1530 aa13.16□□□□□ -0.3
RTTN-213ENST00000638799 SUPT5HO00267 1087 aaKnown RBP13.09□□□□□ -0.31
RTTN-213ENST00000638799 SCRIBQ14160 1630 aa13.08□□□□□ -0.32
RTTN-213ENST00000638799 NACADO15069 1562 aa13.08□□□□□ -0.32
RTTN-213ENST00000638799 RB1CC1Q8TDY2 1594 aa12.95□□□□□ -0.34
RTTN-213ENST00000638799 UNC13AQ9UPW8 1703 aa12.76□□□□□ -0.37
RTTN-213ENST00000638799 RSF1Q96T23 1441 aaPredicted RBP12.74□□□□□ -0.37
RTTN-213ENST00000638799 CECR2Q9BXF3 1484 aa12.73□□□□□ -0.37
RTTN-213ENST00000638799 MROH2BQ7Z745 1585 aa12.65□□□□□ -0.39
RTTN-213ENST00000638799 PABPN1Q86U42 306 aaKnown RBP eCLIP12.64□□□□□ -0.39
RTTN-213ENST00000638799 BICRAQ9NZM4 1560 aa12.62□□□□□ -0.39
RTTN-213ENST00000638799 CHIC1Q5VXU3 224 aa12.57□□□□□ -0.4
RTTN-213ENST00000638799 WIZO95785 1651 aa12.56□□□□□ -0.4
RTTN-213ENST00000638799 BAZ1AQ9NRL2 1556 aaPredicted RBP12.54□□□□□ -0.4
RTTN-213ENST00000638799 SMARCA4P51532 1647 aa12.49□□□□□ -0.41
RTTN-213ENST00000638799 TOP2AP11388 1531 aaKnown RBP12.36□□□□□ -0.43
RTTN-213ENST00000638799 PEG3Q9GZU2 1588 aa12.29□□□□□ -0.44
RTTN-213ENST00000638799 CCDC88BA6NC98 1476 aa12.29□□□□□ -0.44
RTTN-213ENST00000638799 SMARCA2P51531 1590 aa12.28□□□□□ -0.44
RTTN-213ENST00000638799 ATAD2BQ9ULI0 1458 aa12.26□□□□□ -0.45
RTTN-213ENST00000638799 EIF4G1Q04637 1599 aaKnown RBP12.24□□□□□ -0.45
RTTN-213ENST00000638799 TRIM41Q8WV44 630 aa12.23□□□□□ -0.45
RTTN-213ENST00000638799 BAZ1BQ9UIG0 1483 aaKnown RBP12.19□□□□□ -0.46
RTTN-213ENST00000638799 LOC105371045A0A1W2PR82 267 aa12.17□□□□□ -0.46
RTTN-213ENST00000638799 ABCC8Q09428 1581 aa12.13□□□□□ -0.47
RTTN-213ENST00000638799 FAM9AQ8IZU1 332 aaPredicted RBP12.1□□□□□ -0.47
RTTN-213ENST00000638799 NCAPD3P42695 1498 aa12.1□□□□□ -0.47
RTTN-213ENST00000638799 HMGXB3Q12766 1538 aa12.07□□□□□ -0.48
RTTN-213ENST00000638799 CC2D2AQ9P2K1 1620 aa12.01□□□□□ -0.49
RTTN-213ENST00000638799 EHMT2Q96KQ7 1210 aa12□□□□□ -0.49
RTTN-213ENST00000638799 WRNQ14191 1432 aaPredicted RBP eCLIP11.96□□□□□ -0.49
RTTN-213ENST00000638799 SYNJ1O43426 1573 aa11.94□□□□□ -0.5
RTTN-213ENST00000638799 SOGA1O94964 1423 aa11.93□□□□□ -0.5
RTTN-213ENST00000638799 RUSC2Q8N2Y8 1516 aa11.9□□□□□ -0.5
RTTN-213ENST00000638799 CFTRP13569 1480 aa11.89□□□□□ -0.51
RTTN-213ENST00000638799 TOP2BQ02880 1626 aa11.83□□□□□ -0.52
RTTN-213ENST00000638799 CADPSQ9ULU8 1353 aa11.83□□□□□ -0.52
RTTN-213ENST00000638799 DNAJC5BQ9UF47 199 aa11.82□□□□□ -0.52
RTTN-213ENST00000638799 CSRNP3Q8WYN3 585 aa11.81□□□□□ -0.52
RTTN-213ENST00000638799 CUX1P39880 1505 aa11.8□□□□□ -0.52
RTTN-213ENST00000638799 BIVM-ERCC5R4GMW8 1640 aa11.8□□□□□ -0.52
RTTN-213ENST00000638799 PRDM2Q13029 1718 aa11.79□□□□□ -0.52
RTTN-213ENST00000638799 EEA1Q15075 1411 aa11.79□□□□□ -0.52
RTTN-213ENST00000638799 NESP48681 1621 aa11.76□□□□□ -0.53
RTTN-213ENST00000638799 PCGF6Q9BYE7 350 aa11.74□□□□□ -0.53
RTTN-213ENST00000638799 FANCD2Q9BXW9 1451 aa11.71□□□□□ -0.54
RTTN-213ENST00000638799 UBTFP17480 764 aaKnown RBP11.7□□□□□ -0.54
RTTN-213ENST00000638799 GOLGA3Q08378 1498 aa11.69□□□□□ -0.54
RTTN-213ENST00000638799 TNIKQ9UKE5 1360 aa11.69□□□□□ -0.54
RTTN-213ENST00000638799 CEP162Q5TB80 1403 aa11.67□□□□□ -0.54
RTTN-213ENST00000638799 CEP164Q9UPV0 1460 aa11.67□□□□□ -0.54
RTTN-213ENST00000638799 KIF21BO75037 1637 aa11.67□□□□□ -0.54
RTTN-213ENST00000638799 RAPGEF2Q9Y4G8 1499 aa11.66□□□□□ -0.54
RTTN-213ENST00000638799 LAMC3Q9Y6N6 1575 aa11.64□□□□□ -0.55
RTTN-213ENST00000638799 FGD5Q6ZNL6 1462 aa11.64□□□□□ -0.55
RTTN-213ENST00000638799 PPARGC1BQ86YN6 1023 aaKnown RBP11.63□□□□□ -0.55
RTTN-213ENST00000638799 KIF27Q86VH2 1401 aa11.62□□□□□ -0.55
RTTN-213ENST00000638799 TRIM26Q12899 539 aaPredicted RBP11.62□□□□□ -0.55
RTTN-213ENST00000638799 CUX2O14529 1486 aa11.6□□□□□ -0.55
RTTN-213ENST00000638799 DNMBPQ6XZF7 1577 aa11.6□□□□□ -0.55
RTTN-213ENST00000638799 TOPBP1Q92547 1522 aa11.6□□□□□ -0.55
RTTN-213ENST00000638799 PRXQ9BXM0 1461 aa11.6□□□□□ -0.55
RTTN-213ENST00000638799 URB2Q14146 1524 aaKnown RBP11.58□□□□□ -0.56
RTTN-213ENST00000638799 RAD54L2Q9Y4B4 1467 aa11.57□□□□□ -0.56
RTTN-213ENST00000638799 KIF21AQ7Z4S6 1674 aa11.57□□□□□ -0.56
RTTN-213ENST00000638799 PDS5BQ9NTI5 1447 aa11.56□□□□□ -0.56
RTTN-213ENST00000638799 RANGAP1P46060 587 aaPredicted RBP11.56□□□□□ -0.56
RTTN-213ENST00000638799 POLA1P09884 1462 aaPredicted RBP11.56□□□□□ -0.56
RTTN-213ENST00000638799 ERICH3Q5RHP9 1530 aa11.55□□□□□ -0.56
RTTN-213ENST00000638799 IGF1RP08069 1367 aa11.55□□□□□ -0.56
RTTN-213ENST00000638799 CLIP1P30622 1438 aa11.54□□□□□ -0.56
RTTN-213ENST00000638799 TTBK1Q5TCY1 1321 aaPredicted RBP11.51□□□□□ -0.57
RTTN-213ENST00000638799 ABCA10Q8WWZ4 1543 aa11.5□□□□□ -0.57
RTTN-213ENST00000638799 CARMIL1Q5VZK9 1371 aa11.48□□□□□ -0.57
RTTN-213ENST00000638799 PELP1Q8IZL8 1130 aaKnown RBP11.48□□□□□ -0.57
RTTN-213ENST00000638799 HRCP23327 699 aa11.47□□□□□ -0.57
RTTN-213ENST00000638799 WDR97A6NE52 1622 aa11.45□□□□□ -0.58
RTTN-213ENST00000638799 TDRD9Q8NDG6 1382 aaKnown RBP11.45□□□□□ -0.58
RTTN-213ENST00000638799 VPS8Q8N3P4 1428 aa11.44□□□□□ -0.58
RTTN-213ENST00000638799 ARAP1Q96P48 1450 aa11.42□□□□□ -0.58
RTTN-213ENST00000638799 MRC2Q9UBG0 1479 aa11.42□□□□□ -0.58
RTTN-213ENST00000638799 TARBP1Q13395 1621 aaKnown RBP11.41□□□□□ -0.58
RTTN-213ENST00000638799 ABCA5Q8WWZ7 1642 aa11.4□□□□□ -0.58
RTTN-213ENST00000638799 ARHGAP35Q9NRY4 1499 aa11.39□□□□□ -0.59
RTTN-213ENST00000638799 GAPVD1Q14C86 1478 aa11.39□□□□□ -0.59
RTTN-213ENST00000638799 CUL7Q14999 1698 aa11.37□□□□□ -0.59
RTTN-213ENST00000638799 AQRO60306 1485 aaKnown RBP eCLIP11.35□□□□□ -0.59
RTTN-213ENST00000638799 ERCC6Q03468 1493 aa11.35□□□□□ -0.59
RTTN-213ENST00000638799 WDR62O43379 1518 aa11.35□□□□□ -0.59
RTTN-213ENST00000638799 APLP2Q06481 763 aa11.33□□□□□ -0.6
RTTN-213ENST00000638799 ZNF608Q9ULD9 1512 aaPredicted RBP11.32□□□□□ -0.6
RTTN-213ENST00000638799 P3H3Q8IVL6 736 aa11.31□□□□□ -0.6
RTTN-213ENST00000638799 THOC2Q8NI27 1593 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms