RNA–Protein interactions for RNA: ENST00000637709.2

SCN8A-214, Transcript of sodium voltage-gated channel alpha subunit 8, humanhuman

TSL 5

Gene SCN8A, Length 2,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN8A-214ENST00000637709 NISCHQ9Y2I1 1504 aa33.3■■■□□ 2.92
SCN8A-214ENST00000637709 CCDC180Q9P1Z9 1646 aa28.52■■■□□ 2.16
SCN8A-214ENST00000637709 SHROOM4Q9ULL8 1493 aa28.25■■■□□ 2.11
SCN8A-214ENST00000637709 DCAF8L2P0C7V8 631 aa28.09■■■□□ 2.09
SCN8A-214ENST00000637709 ZCCHC6Q5VYS8 1495 aaKnown RBP28.03■■■□□ 2.08
SCN8A-214ENST00000637709 SUPT5HO00267 1087 aaKnown RBP27.37■■□□□ 1.97
SCN8A-214ENST00000637709 ABCC9O60706 1549 aa27.19■■□□□ 1.94
SCN8A-214ENST00000637709 DCAF1Q9Y4B6 1507 aa27.16■■□□□ 1.94
SCN8A-214ENST00000637709 SCRIBQ14160 1630 aa26.86■■□□□ 1.89
SCN8A-214ENST00000637709 MYO15BQ96JP2 1530 aa26.56■■□□□ 1.84
SCN8A-214ENST00000637709 NACADO15069 1562 aa26.51■■□□□ 1.83
SCN8A-214ENST00000637709 RB1CC1Q8TDY2 1594 aa26.26■■□□□ 1.8
SCN8A-214ENST00000637709 CHIC1Q5VXU3 224 aa26.16■■□□□ 1.78
SCN8A-214ENST00000637709 RSF1Q96T23 1441 aaPredicted RBP26.15■■□□□ 1.78
SCN8A-214ENST00000637709 CECR2Q9BXF3 1484 aa26.14■■□□□ 1.77
SCN8A-214ENST00000637709 UNC13AQ9UPW8 1703 aa26.01■■□□□ 1.75
SCN8A-214ENST00000637709 MROH2BQ7Z745 1585 aa25.95■■□□□ 1.74
SCN8A-214ENST00000637709 PABPN1Q86U42 306 aaKnown RBP eCLIP25.93■■□□□ 1.74
SCN8A-214ENST00000637709 WIZO95785 1651 aa25.83■■□□□ 1.73
SCN8A-214ENST00000637709 BICRAQ9NZM4 1560 aa25.63■■□□□ 1.69
SCN8A-214ENST00000637709 BAZ1AQ9NRL2 1556 aaPredicted RBP25.6■■□□□ 1.69
SCN8A-214ENST00000637709 SMARCA4P51532 1647 aa25.52■■□□□ 1.68
SCN8A-214ENST00000637709 LOC105371045A0A1W2PR82 267 aa25.52■■□□□ 1.68
SCN8A-214ENST00000637709 TRIM41Q8WV44 630 aa25.42■■□□□ 1.66
SCN8A-214ENST00000637709 FAM9AQ8IZU1 332 aaPredicted RBP25.37■■□□□ 1.65
SCN8A-214ENST00000637709 EHMT2Q96KQ7 1210 aa25.33■■□□□ 1.65
SCN8A-214ENST00000637709 TOP2AP11388 1531 aaKnown RBP25.27■■□□□ 1.64
SCN8A-214ENST00000637709 CCDC88BA6NC98 1476 aa25.22■■□□□ 1.63
SCN8A-214ENST00000637709 SMARCA2P51531 1590 aa25.17■■□□□ 1.62
SCN8A-214ENST00000637709 EIF4G1Q04637 1599 aaKnown RBP25.08■■□□□ 1.6
SCN8A-214ENST00000637709 ABCC8Q09428 1581 aa25.08■■□□□ 1.6
SCN8A-214ENST00000637709 ATAD2BQ9ULI0 1458 aa24.99■■□□□ 1.59
SCN8A-214ENST00000637709 PEG3Q9GZU2 1588 aa24.94■■□□□ 1.58
SCN8A-214ENST00000637709 BAZ1BQ9UIG0 1483 aaKnown RBP24.92■■□□□ 1.58
SCN8A-214ENST00000637709 PCGF6Q9BYE7 350 aa24.86■■□□□ 1.57
SCN8A-214ENST00000637709 SOGA1O94964 1423 aa24.67■■□□□ 1.54
SCN8A-214ENST00000637709 RUSC2Q8N2Y8 1516 aa24.62■■□□□ 1.53
SCN8A-214ENST00000637709 WRNQ14191 1432 aaPredicted RBP eCLIP24.59■■□□□ 1.53
SCN8A-214ENST00000637709 SYNJ1O43426 1573 aa24.55■■□□□ 1.52
SCN8A-214ENST00000637709 PPARGC1BQ86YN6 1023 aaKnown RBP24.55■■□□□ 1.52
SCN8A-214ENST00000637709 NCAPD3P42695 1498 aa24.54■■□□□ 1.52
SCN8A-214ENST00000637709 HMGXB3Q12766 1538 aa24.49■■□□□ 1.51
SCN8A-214ENST00000637709 CC2D2AQ9P2K1 1620 aa24.41■■□□□ 1.5
SCN8A-214ENST00000637709 CSRNP3Q8WYN3 585 aa24.38■■□□□ 1.49
SCN8A-214ENST00000637709 UBTFP17480 764 aaKnown RBP24.35■■□□□ 1.49
SCN8A-214ENST00000637709 TRIM26Q12899 539 aaPredicted RBP24.35■■□□□ 1.49
SCN8A-214ENST00000637709 TTBK1Q5TCY1 1321 aaPredicted RBP24.31■■□□□ 1.48
SCN8A-214ENST00000637709 HRCP23327 699 aa24.26■■□□□ 1.47
SCN8A-214ENST00000637709 RANGAP1P46060 587 aaPredicted RBP24.24■■□□□ 1.47
SCN8A-214ENST00000637709 CFTRP13569 1480 aa24.22■■□□□ 1.47
SCN8A-214ENST00000637709 TOP2BQ02880 1626 aa24.21■■□□□ 1.47
SCN8A-214ENST00000637709 CEP162Q5TB80 1403 aa24.21■■□□□ 1.47
SCN8A-214ENST00000637709 EEA1Q15075 1411 aa24.18■■□□□ 1.46
SCN8A-214ENST00000637709 CUX1P39880 1505 aa24.18■■□□□ 1.46
SCN8A-214ENST00000637709 DNAJC5BQ9UF47 199 aa24.16■■□□□ 1.46
SCN8A-214ENST00000637709 BIVM-ERCC5R4GMW8 1640 aa24.12■■□□□ 1.45
SCN8A-214ENST00000637709 GOLGA3Q08378 1498 aa24.12■■□□□ 1.45
SCN8A-214ENST00000637709 TNIKQ9UKE5 1360 aa24.11■■□□□ 1.45
SCN8A-214ENST00000637709 CADPSQ9ULU8 1353 aa24.08■■□□□ 1.45
SCN8A-214ENST00000637709 RAPGEF2Q9Y4G8 1499 aa24.08■■□□□ 1.44
SCN8A-214ENST00000637709 NESP48681 1621 aa24.05■■□□□ 1.44
SCN8A-214ENST00000637709 CEP164Q9UPV0 1460 aa24.02■■□□□ 1.44
SCN8A-214ENST00000637709 PRDM2Q13029 1718 aa24.01■■□□□ 1.43
SCN8A-214ENST00000637709 KIF21BO75037 1637 aa23.98■■□□□ 1.43
SCN8A-214ENST00000637709 FANCD2Q9BXW9 1451 aa23.9■■□□□ 1.42
SCN8A-214ENST00000637709 CLIP1P30622 1438 aa23.88■■□□□ 1.41
SCN8A-214ENST00000637709 FGD5Q6ZNL6 1462 aa23.85■■□□□ 1.41
SCN8A-214ENST00000637709 KIF27Q86VH2 1401 aa23.85■■□□□ 1.41
SCN8A-214ENST00000637709 CUX2O14529 1486 aa23.83■■□□□ 1.41
SCN8A-214ENST00000637709 PRXQ9BXM0 1461 aa23.78■■□□□ 1.4
SCN8A-214ENST00000637709 RAD54L2Q9Y4B4 1467 aa23.75■■□□□ 1.39
SCN8A-214ENST00000637709 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.71■■□□□ 1.39
SCN8A-214ENST00000637709 ERICH3Q5RHP9 1530 aa23.68■■□□□ 1.38
SCN8A-214ENST00000637709 IGF1RP08069 1367 aa23.67■■□□□ 1.38
SCN8A-214ENST00000637709 TOPBP1Q92547 1522 aa23.67■■□□□ 1.38
SCN8A-214ENST00000637709 VPS8Q8N3P4 1428 aa23.64■■□□□ 1.38
SCN8A-214ENST00000637709 POLA1P09884 1462 aaPredicted RBP23.64■■□□□ 1.37
SCN8A-214ENST00000637709 DNMBPQ6XZF7 1577 aa23.63■■□□□ 1.37
SCN8A-214ENST00000637709 LAMC3Q9Y6N6 1575 aa23.61■■□□□ 1.37
SCN8A-214ENST00000637709 URB2Q14146 1524 aaKnown RBP23.61■■□□□ 1.37
SCN8A-214ENST00000637709 KIF21AQ7Z4S6 1674 aa23.6■■□□□ 1.37
SCN8A-214ENST00000637709 CARMIL1Q5VZK9 1371 aa23.57■■□□□ 1.36
SCN8A-214ENST00000637709 APLP2Q06481 763 aa23.57■■□□□ 1.36
SCN8A-214ENST00000637709 ARAP1Q96P48 1450 aa23.57■■□□□ 1.36
SCN8A-214ENST00000637709 CCER1Q8TC90 406 aaPredicted RBP23.51■■□□□ 1.35
SCN8A-214ENST00000637709 TDRD9Q8NDG6 1382 aaKnown RBP23.51■■□□□ 1.35
SCN8A-214ENST00000637709 P3H3Q8IVL6 736 aa23.51■■□□□ 1.35
SCN8A-214ENST00000637709 HNRNPUL2Q1KMD3 747 aaKnown RBP23.5■■□□□ 1.35
SCN8A-214ENST00000637709 PDS5BQ9NTI5 1447 aa23.49■■□□□ 1.35
SCN8A-214ENST00000637709 ARHGAP35Q9NRY4 1499 aa23.47■■□□□ 1.35
SCN8A-214ENST00000637709 ABCA10Q8WWZ4 1543 aa23.46■■□□□ 1.35
SCN8A-214ENST00000637709 KANK4Q5T7N3 995 aaPredicted RBP23.46■■□□□ 1.35
SCN8A-214ENST00000637709 ZEB1P37275 1124 aaPredicted RBP23.38■■□□□ 1.33
SCN8A-214ENST00000637709 ATP1B4Q9UN42 357 aaPredicted RBP23.35■■□□□ 1.33
SCN8A-214ENST00000637709 WDR97A6NE52 1622 aa23.35■■□□□ 1.33
SCN8A-214ENST00000637709 GAPVD1Q14C86 1478 aa23.29■■□□□ 1.32
SCN8A-214ENST00000637709 ABCA5Q8WWZ7 1642 aa23.26■■□□□ 1.31
SCN8A-214ENST00000637709 AQRO60306 1485 aaKnown RBP eCLIP23.25■■□□□ 1.31
SCN8A-214ENST00000637709 FHOD3Q2V2M9 1422 aa23.25■■□□□ 1.31
SCN8A-214ENST00000637709 TARBP1Q13395 1621 aaKnown RBP23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms