RNA–Protein interactions for RNA: ENST00000637537.1

CLN5-219, Transcript of CLN5, intracellular trafficking protein, humanhuman

APPRIS ALT2 TSL 4

Gene CLN5, Length 2,520 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN5-219ENST00000637537 NISCHQ9Y2I1 1504 aa40.97■■■■■ 4.15
CLN5-219ENST00000637537 CCDC180Q9P1Z9 1646 aa35.27■■■■□ 3.24
CLN5-219ENST00000637537 ZCCHC6Q5VYS8 1495 aaKnown RBP34.49■■■■□ 3.11
CLN5-219ENST00000637537 SHROOM4Q9ULL8 1493 aa34.25■■■■□ 3.07
CLN5-219ENST00000637537 DCAF8L2P0C7V8 631 aa34.18■■■■□ 3.06
CLN5-219ENST00000637537 DCAF1Q9Y4B6 1507 aa33.64■■■□□ 2.98
CLN5-219ENST00000637537 ABCC9O60706 1549 aa33.37■■■□□ 2.93
CLN5-219ENST00000637537 SUPT5HO00267 1087 aaKnown RBP33.18■■■□□ 2.9
CLN5-219ENST00000637537 MYO15BQ96JP2 1530 aa33■■■□□ 2.87
CLN5-219ENST00000637537 SCRIBQ14160 1630 aa32.88■■■□□ 2.85
CLN5-219ENST00000637537 NACADO15069 1562 aa32.8■■■□□ 2.84
CLN5-219ENST00000637537 RB1CC1Q8TDY2 1594 aa32.46■■■□□ 2.79
CLN5-219ENST00000637537 RSF1Q96T23 1441 aaPredicted RBP32.07■■■□□ 2.72
CLN5-219ENST00000637537 CECR2Q9BXF3 1484 aa32■■■□□ 2.71
CLN5-219ENST00000637537 UNC13AQ9UPW8 1703 aa31.96■■■□□ 2.71
CLN5-219ENST00000637537 CHIC1Q5VXU3 224 aa31.84■■■□□ 2.69
CLN5-219ENST00000637537 MROH2BQ7Z745 1585 aa31.8■■■□□ 2.68
CLN5-219ENST00000637537 PABPN1Q86U42 306 aaKnown RBP eCLIP31.72■■■□□ 2.67
CLN5-219ENST00000637537 WIZO95785 1651 aa31.59■■■□□ 2.65
CLN5-219ENST00000637537 BICRAQ9NZM4 1560 aa31.59■■■□□ 2.65
CLN5-219ENST00000637537 BAZ1AQ9NRL2 1556 aaPredicted RBP31.54■■■□□ 2.64
CLN5-219ENST00000637537 SMARCA4P51532 1647 aa31.39■■■□□ 2.62
CLN5-219ENST00000637537 TOP2AP11388 1531 aaKnown RBP31.08■■■□□ 2.57
CLN5-219ENST00000637537 TRIM41Q8WV44 630 aa30.98■■■□□ 2.55
CLN5-219ENST00000637537 CCDC88BA6NC98 1476 aa30.92■■■□□ 2.54
CLN5-219ENST00000637537 SMARCA2P51531 1590 aa30.89■■■□□ 2.54
CLN5-219ENST00000637537 LOC105371045A0A1W2PR82 267 aa30.86■■■□□ 2.53
CLN5-219ENST00000637537 PEG3Q9GZU2 1588 aa30.84■■■□□ 2.53
CLN5-219ENST00000637537 ATAD2BQ9ULI0 1458 aa30.79■■■□□ 2.52
CLN5-219ENST00000637537 EIF4G1Q04637 1599 aaKnown RBP30.78■■■□□ 2.52
CLN5-219ENST00000637537 FAM9AQ8IZU1 332 aaPredicted RBP30.68■■■□□ 2.5
CLN5-219ENST00000637537 BAZ1BQ9UIG0 1483 aaKnown RBP30.65■■■□□ 2.5
CLN5-219ENST00000637537 ABCC8Q09428 1581 aa30.57■■■□□ 2.48
CLN5-219ENST00000637537 EHMT2Q96KQ7 1210 aa30.44■■■□□ 2.46
CLN5-219ENST00000637537 NCAPD3P42695 1498 aa30.35■■■□□ 2.45
CLN5-219ENST00000637537 HMGXB3Q12766 1538 aa30.28■■■□□ 2.44
CLN5-219ENST00000637537 WRNQ14191 1432 aaPredicted RBP eCLIP30.16■■■□□ 2.42
CLN5-219ENST00000637537 SOGA1O94964 1423 aa30.1■■■□□ 2.41
CLN5-219ENST00000637537 CC2D2AQ9P2K1 1620 aa30.07■■■□□ 2.4
CLN5-219ENST00000637537 SYNJ1O43426 1573 aa30.05■■■□□ 2.4
CLN5-219ENST00000637537 HRCP23327 699 aa30■■■□□ 2.39
CLN5-219ENST00000637537 RUSC2Q8N2Y8 1516 aa30■■■□□ 2.39
CLN5-219ENST00000637537 PCGF6Q9BYE7 350 aa29.95■■■□□ 2.38
CLN5-219ENST00000637537 CFTRP13569 1480 aa29.86■■■□□ 2.37
CLN5-219ENST00000637537 CSRNP3Q8WYN3 585 aa29.84■■■□□ 2.37
CLN5-219ENST00000637537 EEA1Q15075 1411 aa29.78■■■□□ 2.36
CLN5-219ENST00000637537 TOP2BQ02880 1626 aa29.76■■■□□ 2.35
CLN5-219ENST00000637537 CADPSQ9ULU8 1353 aa29.69■■■□□ 2.34
CLN5-219ENST00000637537 BIVM-ERCC5R4GMW8 1640 aa29.67■■■□□ 2.34
CLN5-219ENST00000637537 CUX1P39880 1505 aa29.67■■■□□ 2.34
CLN5-219ENST00000637537 UBTFP17480 764 aaKnown RBP29.64■■■□□ 2.34
CLN5-219ENST00000637537 PRDM2Q13029 1718 aa29.59■■■□□ 2.33
CLN5-219ENST00000637537 TRIM26Q12899 539 aaPredicted RBP29.58■■■□□ 2.33
CLN5-219ENST00000637537 TNIKQ9UKE5 1360 aa29.55■■■□□ 2.32
CLN5-219ENST00000637537 DNAJC5BQ9UF47 199 aa29.55■■■□□ 2.32
CLN5-219ENST00000637537 GOLGA3Q08378 1498 aa29.55■■■□□ 2.32
CLN5-219ENST00000637537 CEP162Q5TB80 1403 aa29.54■■■□□ 2.32
CLN5-219ENST00000637537 PPARGC1BQ86YN6 1023 aaKnown RBP29.52■■■□□ 2.32
CLN5-219ENST00000637537 NESP48681 1621 aa29.48■■■□□ 2.31
CLN5-219ENST00000637537 CEP164Q9UPV0 1460 aa29.48■■■□□ 2.31
CLN5-219ENST00000637537 KIF21BO75037 1637 aa29.43■■■□□ 2.3
CLN5-219ENST00000637537 RAPGEF2Q9Y4G8 1499 aa29.41■■■□□ 2.3
CLN5-219ENST00000637537 FANCD2Q9BXW9 1451 aa29.41■■■□□ 2.3
CLN5-219ENST00000637537 KIF27Q86VH2 1401 aa29.3■■■□□ 2.28
CLN5-219ENST00000637537 RANGAP1P46060 587 aaPredicted RBP29.28■■■□□ 2.28
CLN5-219ENST00000637537 FGD5Q6ZNL6 1462 aa29.27■■■□□ 2.28
CLN5-219ENST00000637537 PRXQ9BXM0 1461 aa29.22■■■□□ 2.27
CLN5-219ENST00000637537 TTBK1Q5TCY1 1321 aaPredicted RBP29.22■■■□□ 2.27
CLN5-219ENST00000637537 CUX2O14529 1486 aa29.21■■■□□ 2.27
CLN5-219ENST00000637537 LAMC3Q9Y6N6 1575 aa29.19■■■□□ 2.26
CLN5-219ENST00000637537 CLIP1P30622 1438 aa29.18■■■□□ 2.26
CLN5-219ENST00000637537 ERICH3Q5RHP9 1530 aa29.12■■■□□ 2.25
CLN5-219ENST00000637537 TOPBP1Q92547 1522 aa29.12■■■□□ 2.25
CLN5-219ENST00000637537 DNMBPQ6XZF7 1577 aa29.12■■■□□ 2.25
CLN5-219ENST00000637537 RAD54L2Q9Y4B4 1467 aa29.08■■■□□ 2.25
CLN5-219ENST00000637537 IGF1RP08069 1367 aa29.07■■■□□ 2.24
CLN5-219ENST00000637537 POLA1P09884 1462 aaPredicted RBP29.05■■■□□ 2.24
CLN5-219ENST00000637537 URB2Q14146 1524 aaKnown RBP29.03■■■□□ 2.24
CLN5-219ENST00000637537 PDS5BQ9NTI5 1447 aa29.03■■■□□ 2.24
CLN5-219ENST00000637537 KIF21AQ7Z4S6 1674 aa28.98■■■□□ 2.23
CLN5-219ENST00000637537 VPS8Q8N3P4 1428 aa28.93■■■□□ 2.22
CLN5-219ENST00000637537 CARMIL1Q5VZK9 1371 aa28.93■■■□□ 2.22
CLN5-219ENST00000637537 ABCA10Q8WWZ4 1543 aa28.91■■■□□ 2.22
CLN5-219ENST00000637537 PELP1Q8IZL8 1130 aaKnown RBP28.85■■■□□ 2.21
CLN5-219ENST00000637537 ARAP1Q96P48 1450 aa28.82■■■□□ 2.2
CLN5-219ENST00000637537 TDRD9Q8NDG6 1382 aaKnown RBP28.79■■■□□ 2.2
CLN5-219ENST00000637537 APLP2Q06481 763 aa28.76■■■□□ 2.19
CLN5-219ENST00000637537 WDR97A6NE52 1622 aa28.74■■■□□ 2.19
CLN5-219ENST00000637537 ARHGAP35Q9NRY4 1499 aa28.73■■■□□ 2.19
CLN5-219ENST00000637537 GAPVD1Q14C86 1478 aa28.64■■■□□ 2.17
CLN5-219ENST00000637537 MRC2Q9UBG0 1479 aa28.63■■■□□ 2.17
CLN5-219ENST00000637537 ABCA5Q8WWZ7 1642 aa28.63■■■□□ 2.17
CLN5-219ENST00000637537 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.61■■■□□ 2.17
CLN5-219ENST00000637537 TARBP1Q13395 1621 aaKnown RBP28.61■■■□□ 2.17
CLN5-219ENST00000637537 CUL7Q14999 1698 aa28.6■■■□□ 2.17
CLN5-219ENST00000637537 P3H3Q8IVL6 736 aa28.57■■■□□ 2.16
CLN5-219ENST00000637537 KANK4Q5T7N3 995 aaPredicted RBP28.55■■■□□ 2.16
CLN5-219ENST00000637537 AQRO60306 1485 aaKnown RBP eCLIP28.5■■■□□ 2.15
CLN5-219ENST00000637537 ZEB1P37275 1124 aaPredicted RBP28.49■■■□□ 2.15
CLN5-219ENST00000637537 ERCC6Q03468 1493 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms