RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 NISCHQ9Y2I1 1504 aa37.64■■■■□ 3.62
CLN3-249ENST00000636685 ABCC9O60706 1549 aa34.98■■■■□ 3.19
CLN3-249ENST00000636685 CCDC180Q9P1Z9 1646 aa34.12■■■■□ 3.05
CLN3-249ENST00000636685 DNAJC5BQ9UF47 199 aa33.57■■■□□ 2.96
CLN3-249ENST00000636685 RB1CC1Q8TDY2 1594 aa32.87■■■□□ 2.85
CLN3-249ENST00000636685 PABPN1Q86U42 306 aaKnown RBP eCLIP32.45■■■□□ 2.79
CLN3-249ENST00000636685 NACADO15069 1562 aa32.44■■■□□ 2.78
CLN3-249ENST00000636685 UNC13AQ9UPW8 1703 aa32.23■■■□□ 2.75
CLN3-249ENST00000636685 DCAF8L2P0C7V8 631 aa32.17■■■□□ 2.74
CLN3-249ENST00000636685 BICRAQ9NZM4 1560 aa32■■■□□ 2.71
CLN3-249ENST00000636685 MYO15BQ96JP2 1530 aa31.67■■■□□ 2.66
CLN3-249ENST00000636685 CECR2Q9BXF3 1484 aa31.57■■■□□ 2.64
CLN3-249ENST00000636685 CC2D2AQ9P2K1 1620 aa31.55■■■□□ 2.64
CLN3-249ENST00000636685 DNAJC5Q9H3Z4 198 aa31.37■■■□□ 2.61
CLN3-249ENST00000636685 SHROOM4Q9ULL8 1493 aa31.36■■■□□ 2.61
CLN3-249ENST00000636685 EIF4G1Q04637 1599 aaKnown RBP31.26■■■□□ 2.59
CLN3-249ENST00000636685 SCRIBQ14160 1630 aa31.1■■■□□ 2.57
CLN3-249ENST00000636685 ZCCHC6Q5VYS8 1495 aaKnown RBP31.01■■■□□ 2.56
CLN3-249ENST00000636685 DCAF1Q9Y4B6 1507 aa30.99■■■□□ 2.55
CLN3-249ENST00000636685 CUX2O14529 1486 aa30.41■■■□□ 2.46
CLN3-249ENST00000636685 ERCC6Q03468 1493 aa30.23■■■□□ 2.43
CLN3-249ENST00000636685 NCAPD3P42695 1498 aa29.96■■■□□ 2.39
CLN3-249ENST00000636685 NESP48681 1621 aa29.83■■■□□ 2.37
CLN3-249ENST00000636685 ATAD2BQ9ULI0 1458 aa29.78■■■□□ 2.36
CLN3-249ENST00000636685 TRIM41Q8WV44 630 aa29.71■■■□□ 2.35
CLN3-249ENST00000636685 THOC2Q8NI27 1593 aaKnown RBP29.66■■■□□ 2.34
CLN3-249ENST00000636685 HMGXB3Q12766 1538 aa29.66■■■□□ 2.34
CLN3-249ENST00000636685 SMARCA2P51531 1590 aa29.62■■■□□ 2.33
CLN3-249ENST00000636685 SMARCA4P51532 1647 aa29.56■■■□□ 2.32
CLN3-249ENST00000636685 BAZ1BQ9UIG0 1483 aaKnown RBP29.44■■■□□ 2.3
CLN3-249ENST00000636685 KIF21AQ7Z4S6 1674 aa29.43■■■□□ 2.3
CLN3-249ENST00000636685 LAMC3Q9Y6N6 1575 aa29.42■■■□□ 2.3
CLN3-249ENST00000636685 PDS5BQ9NTI5 1447 aa29.27■■■□□ 2.28
CLN3-249ENST00000636685 BAZ1AQ9NRL2 1556 aaPredicted RBP29.25■■■□□ 2.27
CLN3-249ENST00000636685 PEG3Q9GZU2 1588 aa29.23■■■□□ 2.27
CLN3-249ENST00000636685 MRC2Q9UBG0 1479 aa29.09■■■□□ 2.25
CLN3-249ENST00000636685 WDR62O43379 1518 aa29.04■■■□□ 2.24
CLN3-249ENST00000636685 MROH2BQ7Z745 1585 aa29.03■■■□□ 2.24
CLN3-249ENST00000636685 CADPSQ9ULU8 1353 aa29.01■■■□□ 2.24
CLN3-249ENST00000636685 OSCARQ8IYS5 282 aa28.9■■■□□ 2.22
CLN3-249ENST00000636685 CEP164Q9UPV0 1460 aa28.8■■■□□ 2.2
CLN3-249ENST00000636685 FANCD2Q9BXW9 1451 aa28.71■■■□□ 2.19
CLN3-249ENST00000636685 RIMBP3CA6NJZ7 1639 aa28.68■■■□□ 2.18
CLN3-249ENST00000636685 RIMBP3BA6NNM3 1639 aa28.68■■■□□ 2.18
CLN3-249ENST00000636685 RIMBP3Q9UFD9 1639 aa28.68■■■□□ 2.18
CLN3-249ENST00000636685 WIZO95785 1651 aa28.67■■■□□ 2.18
CLN3-249ENST00000636685 URB2Q14146 1524 aaKnown RBP28.55■■■□□ 2.16
CLN3-249ENST00000636685 CFTRP13569 1480 aa28.52■■■□□ 2.16
CLN3-249ENST00000636685 ARHGEF11O15085 1522 aa28.48■■■□□ 2.15
CLN3-249ENST00000636685 ZNF608Q9ULD9 1512 aaPredicted RBP28.35■■■□□ 2.13
CLN3-249ENST00000636685 CYB5RLQ6IPT4 315 aa28.33■■■□□ 2.13
CLN3-249ENST00000636685 TRHP20396 242 aaPredicted RBP28.28■■■□□ 2.12
CLN3-249ENST00000636685 IFT140Q96RY7 1462 aa28.25■■■□□ 2.11
CLN3-249ENST00000636685 PRDM2Q13029 1718 aa28.21■■■□□ 2.11
CLN3-249ENST00000636685 TOP2AP11388 1531 aaKnown RBP28.19■■■□□ 2.1
CLN3-249ENST00000636685 ARAP1Q96P48 1450 aa28.15■■■□□ 2.1
CLN3-249ENST00000636685 EIF4G3O43432 1585 aaKnown RBP28.13■■■□□ 2.09
CLN3-249ENST00000636685 CHD1O14646 1710 aa28.12■■■□□ 2.09
CLN3-249ENST00000636685 RSF1Q96T23 1441 aaPredicted RBP28.1■■■□□ 2.09
CLN3-249ENST00000636685 TOPBP1Q92547 1522 aa28.08■■■□□ 2.09
CLN3-249ENST00000636685 AEBP2Q6ZN18 517 aaPredicted RBP28.04■■■□□ 2.08
CLN3-249ENST00000636685 AQRO60306 1485 aaKnown RBP eCLIP27.98■■■□□ 2.07
CLN3-249ENST00000636685 FBLN2P98095 1184 aa27.96■■■□□ 2.07
CLN3-249ENST00000636685 TARBP1Q13395 1621 aaKnown RBP27.91■■■□□ 2.06
CLN3-249ENST00000636685 ABCC8Q09428 1581 aa27.9■■■□□ 2.06
CLN3-249ENST00000636685 CCDC88BA6NC98 1476 aa27.9■■■□□ 2.06
CLN3-249ENST00000636685 DNMBPQ6XZF7 1577 aa27.9■■■□□ 2.06
CLN3-249ENST00000636685 POLA1P09884 1462 aaPredicted RBP27.74■■■□□ 2.03
CLN3-249ENST00000636685 CLASP1Q7Z460 1538 aa27.72■■■□□ 2.03
CLN3-249ENST00000636685 RAD54L2Q9Y4B4 1467 aa27.69■■■□□ 2.02
CLN3-249ENST00000636685 TDRD9Q8NDG6 1382 aaKnown RBP27.67■■■□□ 2.02
CLN3-249ENST00000636685 SNAPC4Q5SXM2 1469 aa27.65■■■□□ 2.02
CLN3-249ENST00000636685 SYNJ1O43426 1573 aa27.61■■■□□ 2.01
CLN3-249ENST00000636685 SOGA1O94964 1423 aa27.59■■■□□ 2.01
CLN3-249ENST00000636685 CHMP7Q8WUX9 453 aaPredicted RBP27.59■■■□□ 2.01
CLN3-249ENST00000636685 MAGI1Q96QZ7 1491 aaPredicted RBP27.51■■□□□ 1.99
CLN3-249ENST00000636685 WDR97A6NE52 1622 aa27.49■■□□□ 1.99
CLN3-249ENST00000636685 GAPVD1Q14C86 1478 aa27.49■■□□□ 1.99
CLN3-249ENST00000636685 FGD5Q6ZNL6 1462 aa27.46■■□□□ 1.99
CLN3-249ENST00000636685 SYNJ2O15056 1496 aa27.44■■□□□ 1.98
CLN3-249ENST00000636685 GRIN2BQ13224 1484 aa27.44■■□□□ 1.98
CLN3-249ENST00000636685 PBRM1Q86U86 1689 aa27.33■■□□□ 1.97
CLN3-249ENST00000636685 CUX1P39880 1505 aa27.31■■□□□ 1.96
CLN3-249ENST00000636685 ERCC6L2Q5T890 1561 aa27.29■■□□□ 1.96
CLN3-249ENST00000636685 KIF13AQ9H1H9 1805 aa27.18■■□□□ 1.94
CLN3-249ENST00000636685 ABCA5Q8WWZ7 1642 aa27.13■■□□□ 1.93
CLN3-249ENST00000636685 CEP170Q5SW79 1584 aa27.13■■□□□ 1.93
CLN3-249ENST00000636685 GRIN2AQ12879 1464 aa27.09■■□□□ 1.93
CLN3-249ENST00000636685 ABCA10Q8WWZ4 1543 aa27.07■■□□□ 1.92
CLN3-249ENST00000636685 NUP160Q12769 1436 aa27.02■■□□□ 1.92
CLN3-249ENST00000636685 SHROOM2Q13796 1616 aa27.01■■□□□ 1.92
CLN3-249ENST00000636685 ADAMTS12P58397 1594 aa26.99■■□□□ 1.91
CLN3-249ENST00000636685 ILDR1Q86SU0 546 aaPredicted RBP26.94■■□□□ 1.9
CLN3-249ENST00000636685 KDM4FA0A1W2PPD8 638 aa26.9■■□□□ 1.9
CLN3-249ENST00000636685 FAM69CQ0P6D2 419 aa26.89■■□□□ 1.9
CLN3-249ENST00000636685 ABCC10Q5T3U5 1492 aa26.86■■□□□ 1.89
CLN3-249ENST00000636685 PRG4Q92954 1404 aaPredicted RBP26.85■■□□□ 1.89
CLN3-249ENST00000636685 FHAD1B1AJZ9 1412 aa26.84■■□□□ 1.89
CLN3-249ENST00000636685 WRNQ14191 1432 aaPredicted RBP eCLIP26.79■■□□□ 1.88
CLN3-249ENST00000636685 DIP2BQ9P265 1576 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms