RNA–Protein interactions for RNA: ENST00000636020.1

CLN6-212, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-212ENST00000636020 NISCHQ9Y2I1 1504 aa46.84■■■■■ 5.09
CLN6-212ENST00000636020 ABCC9O60706 1549 aa43.32■■■■■ 4.53
CLN6-212ENST00000636020 CCDC180Q9P1Z9 1646 aa42.36■■■■■ 4.37
CLN6-212ENST00000636020 DNAJC5BQ9UF47 199 aa41.57■■■■■ 4.25
CLN6-212ENST00000636020 RB1CC1Q8TDY2 1594 aa40.8■■■■■ 4.12
CLN6-212ENST00000636020 NACADO15069 1562 aa40.31■■■■■ 4.04
CLN6-212ENST00000636020 PABPN1Q86U42 306 aaKnown RBP eCLIP40.23■■■■■ 4.03
CLN6-212ENST00000636020 DCAF8L2P0C7V8 631 aa39.95■■■■□ 3.99
CLN6-212ENST00000636020 UNC13AQ9UPW8 1703 aa39.85■■■■□ 3.97
CLN6-212ENST00000636020 BICRAQ9NZM4 1560 aa39.69■■■■□ 3.94
CLN6-212ENST00000636020 MYO15BQ96JP2 1530 aa39.49■■■■□ 3.91
CLN6-212ENST00000636020 CECR2Q9BXF3 1484 aa39.13■■■■□ 3.85
CLN6-212ENST00000636020 CC2D2AQ9P2K1 1620 aa39.07■■■■□ 3.85
CLN6-212ENST00000636020 SHROOM4Q9ULL8 1493 aa39.04■■■■□ 3.84
CLN6-212ENST00000636020 DNAJC5Q9H3Z4 198 aa38.83■■■■□ 3.81
CLN6-212ENST00000636020 EIF4G1Q04637 1599 aaKnown RBP38.77■■■■□ 3.8
CLN6-212ENST00000636020 DCAF1Q9Y4B6 1507 aa38.63■■■■□ 3.78
CLN6-212ENST00000636020 ZCCHC6Q5VYS8 1495 aaKnown RBP38.6■■■■□ 3.77
CLN6-212ENST00000636020 SCRIBQ14160 1630 aa38.55■■■■□ 3.76
CLN6-212ENST00000636020 CUX2O14529 1486 aa37.72■■■■□ 3.63
CLN6-212ENST00000636020 ERCC6Q03468 1493 aa37.45■■■■□ 3.59
CLN6-212ENST00000636020 NCAPD3P42695 1498 aa37.28■■■■□ 3.56
CLN6-212ENST00000636020 ATAD2BQ9ULI0 1458 aa37.02■■■■□ 3.52
CLN6-212ENST00000636020 NESP48681 1621 aa36.96■■■■□ 3.51
CLN6-212ENST00000636020 HMGXB3Q12766 1538 aa36.86■■■■□ 3.49
CLN6-212ENST00000636020 SMARCA2P51531 1590 aa36.83■■■■□ 3.49
CLN6-212ENST00000636020 THOC2Q8NI27 1593 aaKnown RBP36.74■■■■□ 3.47
CLN6-212ENST00000636020 SMARCA4P51532 1647 aa36.7■■■■□ 3.47
CLN6-212ENST00000636020 TRIM41Q8WV44 630 aa36.68■■■■□ 3.46
CLN6-212ENST00000636020 BAZ1BQ9UIG0 1483 aaKnown RBP36.57■■■■□ 3.45
CLN6-212ENST00000636020 LAMC3Q9Y6N6 1575 aa36.53■■■■□ 3.44
CLN6-212ENST00000636020 BAZ1AQ9NRL2 1556 aaPredicted RBP36.39■■■■□ 3.42
CLN6-212ENST00000636020 KIF21AQ7Z4S6 1674 aa36.39■■■■□ 3.42
CLN6-212ENST00000636020 PDS5BQ9NTI5 1447 aa36.38■■■■□ 3.41
CLN6-212ENST00000636020 PEG3Q9GZU2 1588 aa36.37■■■■□ 3.41
CLN6-212ENST00000636020 MRC2Q9UBG0 1479 aa36.11■■■■□ 3.37
CLN6-212ENST00000636020 CADPSQ9ULU8 1353 aa36.1■■■■□ 3.37
CLN6-212ENST00000636020 MROH2BQ7Z745 1585 aa36.08■■■■□ 3.37
CLN6-212ENST00000636020 WDR62O43379 1518 aa36.03■■■■□ 3.36
CLN6-212ENST00000636020 OSCARQ8IYS5 282 aa35.89■■■■□ 3.34
CLN6-212ENST00000636020 CEP164Q9UPV0 1460 aa35.77■■■■□ 3.32
CLN6-212ENST00000636020 FANCD2Q9BXW9 1451 aa35.67■■■■□ 3.3
CLN6-212ENST00000636020 WIZO95785 1651 aa35.56■■■■□ 3.28
CLN6-212ENST00000636020 CFTRP13569 1480 aa35.48■■■■□ 3.27
CLN6-212ENST00000636020 RIMBP3CA6NJZ7 1639 aa35.46■■■■□ 3.27
CLN6-212ENST00000636020 RIMBP3BA6NNM3 1639 aa35.46■■■■□ 3.27
CLN6-212ENST00000636020 RIMBP3Q9UFD9 1639 aa35.46■■■■□ 3.27
CLN6-212ENST00000636020 URB2Q14146 1524 aaKnown RBP35.44■■■■□ 3.26
CLN6-212ENST00000636020 ARHGEF11O15085 1522 aa35.27■■■■□ 3.24
CLN6-212ENST00000636020 ZNF608Q9ULD9 1512 aaPredicted RBP35.16■■■■□ 3.22
CLN6-212ENST00000636020 IFT140Q96RY7 1462 aa35.11■■■■□ 3.21
CLN6-212ENST00000636020 CYB5RLQ6IPT4 315 aa35.11■■■■□ 3.21
CLN6-212ENST00000636020 TOP2AP11388 1531 aaKnown RBP35.06■■■■□ 3.2
CLN6-212ENST00000636020 RSF1Q96T23 1441 aaPredicted RBP35.02■■■■□ 3.2
CLN6-212ENST00000636020 TRHP20396 242 aaPredicted RBP35■■■■□ 3.19
CLN6-212ENST00000636020 PRDM2Q13029 1718 aa34.93■■■■□ 3.18
CLN6-212ENST00000636020 TOPBP1Q92547 1522 aa34.89■■■■□ 3.18
CLN6-212ENST00000636020 ARAP1Q96P48 1450 aa34.87■■■■□ 3.17
CLN6-212ENST00000636020 EIF4G3O43432 1585 aaKnown RBP34.85■■■■□ 3.17
CLN6-212ENST00000636020 CHD1O14646 1710 aa34.75■■■■□ 3.15
CLN6-212ENST00000636020 ABCC8Q09428 1581 aa34.74■■■■□ 3.15
CLN6-212ENST00000636020 AQRO60306 1485 aaKnown RBP eCLIP34.73■■■■□ 3.155e-8■□□□□ 10.1
CLN6-212ENST00000636020 CCDC88BA6NC98 1476 aa34.71■■■■□ 3.15
CLN6-212ENST00000636020 FBLN2P98095 1184 aa34.68■■■■□ 3.14
CLN6-212ENST00000636020 AEBP2Q6ZN18 517 aaPredicted RBP34.65■■■■□ 3.14
CLN6-212ENST00000636020 DNMBPQ6XZF7 1577 aa34.65■■■■□ 3.14
CLN6-212ENST00000636020 TARBP1Q13395 1621 aaKnown RBP34.64■■■■□ 3.14
CLN6-212ENST00000636020 POLA1P09884 1462 aaPredicted RBP34.47■■■■□ 3.11
CLN6-212ENST00000636020 CLASP1Q7Z460 1538 aa34.4■■■■□ 3.1
CLN6-212ENST00000636020 RAD54L2Q9Y4B4 1467 aa34.38■■■■□ 3.09
CLN6-212ENST00000636020 TDRD9Q8NDG6 1382 aaKnown RBP34.37■■■■□ 3.09
CLN6-212ENST00000636020 SOGA1O94964 1423 aa34.32■■■■□ 3.08
CLN6-212ENST00000636020 SNAPC4Q5SXM2 1469 aa34.32■■■■□ 3.08
CLN6-212ENST00000636020 CHMP7Q8WUX9 453 aaPredicted RBP34.29■■■■□ 3.08
CLN6-212ENST00000636020 SYNJ1O43426 1573 aa34.25■■■■□ 3.07
CLN6-212ENST00000636020 MAGI1Q96QZ7 1491 aaPredicted RBP34.19■■■■□ 3.06
CLN6-212ENST00000636020 WDR97A6NE52 1622 aa34.19■■■■□ 3.06
CLN6-212ENST00000636020 GRIN2BQ13224 1484 aa34.11■■■■□ 3.05
CLN6-212ENST00000636020 FGD5Q6ZNL6 1462 aa34.11■■■■□ 3.05
CLN6-212ENST00000636020 GAPVD1Q14C86 1478 aa34.1■■■■□ 3.05
CLN6-212ENST00000636020 SYNJ2O15056 1496 aa34.09■■■■□ 3.05
CLN6-212ENST00000636020 CUX1P39880 1505 aa33.94■■■■□ 3.02
CLN6-212ENST00000636020 PBRM1Q86U86 1689 aa33.83■■■■□ 3.01
CLN6-212ENST00000636020 ERCC6L2Q5T890 1561 aa33.8■■■■□ 3
CLN6-212ENST00000636020 ABCA10Q8WWZ4 1543 aa33.69■■■□□ 2.98
CLN6-212ENST00000636020 ABCA5Q8WWZ7 1642 aa33.68■■■□□ 2.98
CLN6-212ENST00000636020 GRIN2AQ12879 1464 aa33.66■■■□□ 2.98
CLN6-212ENST00000636020 CEP170Q5SW79 1584 aa33.64■■■□□ 2.98
CLN6-212ENST00000636020 NUP160Q12769 1436 aa33.61■■■□□ 2.97
CLN6-212ENST00000636020 KIF13AQ9H1H9 1805 aa33.57■■■□□ 2.96
CLN6-212ENST00000636020 SHROOM2Q13796 1616 aa33.53■■■□□ 2.96
CLN6-212ENST00000636020 ADAMTS12P58397 1594 aa33.49■■■□□ 2.95
CLN6-212ENST00000636020 FHAD1B1AJZ9 1412 aa33.41■■■□□ 2.94
CLN6-212ENST00000636020 WRNQ14191 1432 aaPredicted RBP eCLIP33.37■■■□□ 2.931e-9■■■■■ 46
CLN6-212ENST00000636020 FAM69CQ0P6D2 419 aa33.37■■■□□ 2.93
CLN6-212ENST00000636020 PRG4Q92954 1404 aaPredicted RBP33.36■■■□□ 2.93
CLN6-212ENST00000636020 ABCC10Q5T3U5 1492 aa33.34■■■□□ 2.93
CLN6-212ENST00000636020 KDM4FA0A1W2PPD8 638 aa33.33■■■□□ 2.93
CLN6-212ENST00000636020 JPH4Q96JJ6 628 aa33.3■■■□□ 2.92
CLN6-212ENST00000636020 ILDR1Q86SU0 546 aaPredicted RBP33.26■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms