RNA–Protein interactions for RNA: ENST00000633364.1

LIMS4-205, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 957 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-205ENST00000633364 NISCHQ9Y2I1 1504 aa37.9■■■■□ 3.66
LIMS4-205ENST00000633364 CCDC180Q9P1Z9 1646 aa33.8■■■■□ 3
LIMS4-205ENST00000633364 ABCC9O60706 1549 aa33.47■■■□□ 2.95
LIMS4-205ENST00000633364 DCAF8L2P0C7V8 631 aa32.04■■■□□ 2.72
LIMS4-205ENST00000633364 RB1CC1Q8TDY2 1594 aa32.03■■■□□ 2.72
LIMS4-205ENST00000633364 NACADO15069 1562 aa31.9■■■□□ 2.7
LIMS4-205ENST00000633364 MYO15BQ96JP2 1530 aa31.54■■■□□ 2.64
LIMS4-205ENST00000633364 ZCCHC6Q5VYS8 1495 aaKnown RBP31.47■■■□□ 2.63
LIMS4-205ENST00000633364 DCAF1Q9Y4B6 1507 aa31.29■■■□□ 2.6
LIMS4-205ENST00000633364 PABPN1Q86U42 306 aaKnown RBP eCLIP31.27■■■□□ 2.6
LIMS4-205ENST00000633364 UNC13AQ9UPW8 1703 aa31.21■■■□□ 2.59
LIMS4-205ENST00000633364 BICRAQ9NZM4 1560 aa30.98■■■□□ 2.55
LIMS4-205ENST00000633364 DNAJC5BQ9UF47 199 aa30.95■■■□□ 2.55
LIMS4-205ENST00000633364 SCRIBQ14160 1630 aa30.89■■■□□ 2.54
LIMS4-205ENST00000633364 SHROOM4Q9ULL8 1493 aa30.66■■■□□ 2.5
LIMS4-205ENST00000633364 EIF4G1Q04637 1599 aaKnown RBP30.24■■■□□ 2.43
LIMS4-205ENST00000633364 CC2D2AQ9P2K1 1620 aa30.22■■■□□ 2.43
LIMS4-205ENST00000633364 CECR2Q9BXF3 1484 aa30.11■■■□□ 2.41
LIMS4-205ENST00000633364 SMARCA4P51532 1647 aa29.47■■■□□ 2.31
LIMS4-205ENST00000633364 NCAPD3P42695 1498 aa29.42■■■□□ 2.3
LIMS4-205ENST00000633364 BAZ1AQ9NRL2 1556 aaPredicted RBP29.42■■■□□ 2.3
LIMS4-205ENST00000633364 ATAD2BQ9ULI0 1458 aa29.4■■■□□ 2.3
LIMS4-205ENST00000633364 SMARCA2P51531 1590 aa29.38■■■□□ 2.29
LIMS4-205ENST00000633364 HMGXB3Q12766 1538 aa29.23■■■□□ 2.27
LIMS4-205ENST00000633364 MROH2BQ7Z745 1585 aa29.2■■■□□ 2.26
LIMS4-205ENST00000633364 BAZ1BQ9UIG0 1483 aaKnown RBP29.19■■■□□ 2.26
LIMS4-205ENST00000633364 PEG3Q9GZU2 1588 aa29.13■■■□□ 2.25
LIMS4-205ENST00000633364 ERCC6Q03468 1493 aa28.94■■■□□ 2.22
LIMS4-205ENST00000633364 WIZO95785 1651 aa28.89■■■□□ 2.21
LIMS4-205ENST00000633364 NESP48681 1621 aa28.83■■■□□ 2.21
LIMS4-205ENST00000633364 RSF1Q96T23 1441 aaPredicted RBP28.77■■■□□ 2.2
LIMS4-205ENST00000633364 LAMC3Q9Y6N6 1575 aa28.71■■■□□ 2.19
LIMS4-205ENST00000633364 CUX2O14529 1486 aa28.66■■■□□ 2.18
LIMS4-205ENST00000633364 CADPSQ9ULU8 1353 aa28.6■■■□□ 2.17
LIMS4-205ENST00000633364 PDS5BQ9NTI5 1447 aa28.6■■■□□ 2.17
LIMS4-205ENST00000633364 TOP2AP11388 1531 aaKnown RBP28.55■■■□□ 2.16
LIMS4-205ENST00000633364 KIF21AQ7Z4S6 1674 aa28.46■■■□□ 2.15
LIMS4-205ENST00000633364 THOC2Q8NI27 1593 aaKnown RBP28.41■■■□□ 2.14
LIMS4-205ENST00000633364 CFTRP13569 1480 aa28.32■■■□□ 2.12
LIMS4-205ENST00000633364 MRC2Q9UBG0 1479 aa28.27■■■□□ 2.12
LIMS4-205ENST00000633364 CEP164Q9UPV0 1460 aa28.27■■■□□ 2.12
LIMS4-205ENST00000633364 FANCD2Q9BXW9 1451 aa28.27■■■□□ 2.12
LIMS4-205ENST00000633364 CCDC88BA6NC98 1476 aa28.24■■■□□ 2.11
LIMS4-205ENST00000633364 DNAJC5Q9H3Z4 198 aa28.18■■■□□ 2.1
LIMS4-205ENST00000633364 WDR62O43379 1518 aa28.14■■■□□ 2.1
LIMS4-205ENST00000633364 PRDM2Q13029 1718 aa28.05■■■□□ 2.08
LIMS4-205ENST00000633364 SUPT5HO00267 1087 aaKnown RBP27.97■■■□□ 2.07
LIMS4-205ENST00000633364 URB2Q14146 1524 aaKnown RBP27.96■■■□□ 2.07
LIMS4-205ENST00000633364 ABCC8Q09428 1581 aa27.77■■■□□ 2.04
LIMS4-205ENST00000633364 TOPBP1Q92547 1522 aa27.75■■■□□ 2.03
LIMS4-205ENST00000633364 DNMBPQ6XZF7 1577 aa27.69■■■□□ 2.02
LIMS4-205ENST00000633364 IFT140Q96RY7 1462 aa27.68■■■□□ 2.02
LIMS4-205ENST00000633364 ZNF608Q9ULD9 1512 aaPredicted RBP27.56■■■□□ 2
LIMS4-205ENST00000633364 OSCARQ8IYS5 282 aa27.51■■□□□ 1.99
LIMS4-205ENST00000633364 POLA1P09884 1462 aaPredicted RBP27.5■■□□□ 1.99
LIMS4-205ENST00000633364 SOGA1O94964 1423 aa27.44■■□□□ 1.98
LIMS4-205ENST00000633364 TARBP1Q13395 1621 aaKnown RBP27.43■■□□□ 1.98
LIMS4-205ENST00000633364 EIF4G3O43432 1585 aaKnown RBP27.42■■□□□ 1.98
LIMS4-205ENST00000633364 CUX1P39880 1505 aa27.41■■□□□ 1.98
LIMS4-205ENST00000633364 AQRO60306 1485 aaKnown RBP eCLIP27.4■■□□□ 1.98
LIMS4-205ENST00000633364 FGD5Q6ZNL6 1462 aa27.4■■□□□ 1.98
LIMS4-205ENST00000633364 RAD54L2Q9Y4B4 1467 aa27.4■■□□□ 1.98
LIMS4-205ENST00000633364 TDRD9Q8NDG6 1382 aaKnown RBP27.33■■□□□ 1.97
LIMS4-205ENST00000633364 FBLN2P98095 1184 aa27.28■■□□□ 1.96
LIMS4-205ENST00000633364 TRIM41Q8WV44 630 aa27.23■■□□□ 1.95
LIMS4-205ENST00000633364 WDR97A6NE52 1622 aa27.22■■□□□ 1.95
LIMS4-205ENST00000633364 WRNQ14191 1432 aaPredicted RBP eCLIP27.18■■□□□ 1.94
LIMS4-205ENST00000633364 CHD1O14646 1710 aa27.15■■□□□ 1.94
LIMS4-205ENST00000633364 GRIN2BQ13224 1484 aa27.13■■□□□ 1.93
LIMS4-205ENST00000633364 SNAPC4Q5SXM2 1469 aa27.13■■□□□ 1.93
LIMS4-205ENST00000633364 CHMP7Q8WUX9 453 aaPredicted RBP27.11■■□□□ 1.93
LIMS4-205ENST00000633364 TOP2BQ02880 1626 aa27.1■■□□□ 1.93
LIMS4-205ENST00000633364 GAPVD1Q14C86 1478 aa27.1■■□□□ 1.93
LIMS4-205ENST00000633364 ABCA10Q8WWZ4 1543 aa27.1■■□□□ 1.93
LIMS4-205ENST00000633364 BIVM-ERCC5R4GMW8 1640 aa27.08■■□□□ 1.93
LIMS4-205ENST00000633364 MAGI1Q96QZ7 1491 aaPredicted RBP27.07■■□□□ 1.92
LIMS4-205ENST00000633364 SYNJ1O43426 1573 aa27.06■■□□□ 1.92
LIMS4-205ENST00000633364 PBRM1Q86U86 1689 aa27.01■■□□□ 1.92
LIMS4-205ENST00000633364 RIMBP3CA6NJZ7 1639 aa27■■□□□ 1.91
LIMS4-205ENST00000633364 RIMBP3BA6NNM3 1639 aa27■■□□□ 1.91
LIMS4-205ENST00000633364 RIMBP3Q9UFD9 1639 aa27■■□□□ 1.91
LIMS4-205ENST00000633364 ABCA5Q8WWZ7 1642 aa26.98■■□□□ 1.91
LIMS4-205ENST00000633364 SYNJ2O15056 1496 aa26.98■■□□□ 1.91
LIMS4-205ENST00000633364 ARHGEF11O15085 1522 aa26.96■■□□□ 1.91
LIMS4-205ENST00000633364 CYB5RLQ6IPT4 315 aa26.85■■□□□ 1.89
LIMS4-205ENST00000633364 CLASP1Q7Z460 1538 aa26.81■■□□□ 1.88
LIMS4-205ENST00000633364 ERICH3Q5RHP9 1530 aa26.78■■□□□ 1.88
LIMS4-205ENST00000633364 ADAMTS12P58397 1594 aa26.77■■□□□ 1.88
LIMS4-205ENST00000633364 FHAD1B1AJZ9 1412 aa26.77■■□□□ 1.88
LIMS4-205ENST00000633364 GRIN2AQ12879 1464 aa26.76■■□□□ 1.87
LIMS4-205ENST00000633364 ARAP1Q96P48 1450 aa26.71■■□□□ 1.87
LIMS4-205ENST00000633364 KIF27Q86VH2 1401 aa26.66■■□□□ 1.86
LIMS4-205ENST00000633364 NUP160Q12769 1436 aa26.62■■□□□ 1.85
LIMS4-205ENST00000633364 CEP170Q5SW79 1584 aa26.62■■□□□ 1.85
LIMS4-205ENST00000633364 IGF1RP08069 1367 aa26.55■■□□□ 1.84
LIMS4-205ENST00000633364 CUL7Q14999 1698 aa26.48■■□□□ 1.83
LIMS4-205ENST00000633364 TRHP20396 242 aaPredicted RBP26.48■■□□□ 1.83
LIMS4-205ENST00000633364 JPH4Q96JJ6 628 aa26.45■■□□□ 1.82
LIMS4-205ENST00000633364 ERCC6L2Q5T890 1561 aa26.43■■□□□ 1.82
LIMS4-205ENST00000633364 CARMIL1Q5VZK9 1371 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms