RNA–Protein interactions for RNA: ENST00000628689.2

TCF4-266, Transcript of transcription factor 4, humanhuman

TSL 5

Gene TCF4, Length 721 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-266ENST00000628689 AEBP2Q6ZN18 517 aaPredicted RBP19.2■□□□□ 0.66
TCF4-266ENST00000628689 CHIC1Q5VXU3 224 aa18.77■□□□□ 0.6
TCF4-266ENST00000628689 NISCHQ9Y2I1 1504 aa18.73■□□□□ 0.59
TCF4-266ENST00000628689 ABCC9O60706 1549 aa18.07■□□□□ 0.48
TCF4-266ENST00000628689 DNAJC5BQ9UF47 199 aa17.84■□□□□ 0.45
TCF4-266ENST00000628689 CCDC180Q9P1Z9 1646 aa17.1■□□□□ 0.33
TCF4-266ENST00000628689 DNAJC5Q9H3Z4 198 aa16.98■□□□□ 0.31
TCF4-266ENST00000628689 RB1CC1Q8TDY2 1594 aa16.74■□□□□ 0.27
TCF4-266ENST00000628689 PABPN1Q86U42 306 aaKnown RBP eCLIP16.74■□□□□ 0.27
TCF4-266ENST00000628689 PHF23Q9BUL5 403 aaPredicted RBP16.51■□□□□ 0.23
TCF4-266ENST00000628689 NACADO15069 1562 aa16.43■□□□□ 0.22
TCF4-266ENST00000628689 UNC13AQ9UPW8 1703 aa16.39■□□□□ 0.21
TCF4-266ENST00000628689 CECR2Q9BXF3 1484 aa16.35■□□□□ 0.21
TCF4-266ENST00000628689 BICRAQ9NZM4 1560 aa16.34■□□□□ 0.21
TCF4-266ENST00000628689 SENP3Q9H4L4 574 aaPredicted RBP16.29■□□□□ 0.2
TCF4-266ENST00000628689 DCAF8L2P0C7V8 631 aa16.27■□□□□ 0.2
TCF4-266ENST00000628689 CC2D2AQ9P2K1 1620 aa16.25■□□□□ 0.19
TCF4-266ENST00000628689 EIF4G1Q04637 1599 aaKnown RBP15.99■□□□□ 0.15
TCF4-266ENST00000628689 SHROOM4Q9ULL8 1493 aa15.93■□□□□ 0.14
TCF4-266ENST00000628689 MYO15BQ96JP2 1530 aa15.89■□□□□ 0.13
TCF4-266ENST00000628689 CUX2O14529 1486 aa15.88■□□□□ 0.13
TCF4-266ENST00000628689 TRIM41Q8WV44 630 aa15.85■□□□□ 0.13
TCF4-266ENST00000628689 ERCC6Q03468 1493 aa15.61■□□□□ 0.09
TCF4-266ENST00000628689 SCRIBQ14160 1630 aa15.59■□□□□ 0.09
TCF4-266ENST00000628689 DCAF1Q9Y4B6 1507 aa15.38■□□□□ 0.05
TCF4-266ENST00000628689 ZCCHC6Q5VYS8 1495 aaKnown RBP15.3■□□□□ 0.04
TCF4-266ENST00000628689 NESP48681 1621 aa15.28■□□□□ 0.04
TCF4-266ENST00000628689 PLPPR3Q6T4P5 718 aa15.24■□□□□ 0.03
TCF4-266ENST00000628689 THOC2Q8NI27 1593 aaKnown RBP15.24■□□□□ 0.03
TCF4-266ENST00000628689 NCAPD3P42695 1498 aa15.22■□□□□ 0.03
TCF4-266ENST00000628689 FOXD1Q16676 465 aa15.11■□□□□ 0.01
TCF4-266ENST00000628689 OSCARQ8IYS5 282 aa15.09■□□□□ 0.01
TCF4-266ENST00000628689 SMARCA2P51531 1590 aa15.07■□□□□ 0
TCF4-266ENST00000628689 ATAD2BQ9ULI0 1458 aa15.05■□□□□ -0
TCF4-266ENST00000628689 BAZ1AQ9NRL2 1556 aaPredicted RBP15□□□□□ -0.01
TCF4-266ENST00000628689 KIF21AQ7Z4S6 1674 aa15□□□□□ -0.01
TCF4-266ENST00000628689 LAMC3Q9Y6N6 1575 aa14.96□□□□□ -0.01
TCF4-266ENST00000628689 HMGXB3Q12766 1538 aa14.96□□□□□ -0.02
TCF4-266ENST00000628689 PDS5BQ9NTI5 1447 aa14.93□□□□□ -0.02
TCF4-266ENST00000628689 RIMBP3CA6NJZ7 1639 aa14.93□□□□□ -0.02
TCF4-266ENST00000628689 RIMBP3BA6NNM3 1639 aa14.93□□□□□ -0.02
TCF4-266ENST00000628689 RIMBP3Q9UFD9 1639 aa14.93□□□□□ -0.02
TCF4-266ENST00000628689 TRHP20396 242 aaPredicted RBP14.91□□□□□ -0.02
TCF4-266ENST00000628689 MRC2Q9UBG0 1479 aa14.85□□□□□ -0.03
TCF4-266ENST00000628689 WDR62O43379 1518 aa14.83□□□□□ -0.04
TCF4-266ENST00000628689 CYB5RLQ6IPT4 315 aa14.82□□□□□ -0.04
TCF4-266ENST00000628689 BAZ1BQ9UIG0 1483 aaKnown RBP14.82□□□□□ -0.04
TCF4-266ENST00000628689 ARHGEF11O15085 1522 aa14.8□□□□□ -0.04
TCF4-266ENST00000628689 SMARCA4P51532 1647 aa14.77□□□□□ -0.05
TCF4-266ENST00000628689 CADPSQ9ULU8 1353 aa14.72□□□□□ -0.05
TCF4-266ENST00000628689 ILDR1Q86SU0 546 aaPredicted RBP14.67□□□□□ -0.06
TCF4-266ENST00000628689 PEG3Q9GZU2 1588 aa14.63□□□□□ -0.07
TCF4-266ENST00000628689 ARAP1Q96P48 1450 aa14.6□□□□□ -0.07
TCF4-266ENST00000628689 CEP164Q9UPV0 1460 aa14.6□□□□□ -0.07
TCF4-266ENST00000628689 PPP6R1Q9UPN7 881 aa14.56□□□□□ -0.08
TCF4-266ENST00000628689 FANCD2Q9BXW9 1451 aa14.53□□□□□ -0.08
TCF4-266ENST00000628689 ADRA2BP18089 450 aa14.53□□□□□ -0.08
TCF4-266ENST00000628689 URB2Q14146 1524 aaKnown RBP14.48□□□□□ -0.09
TCF4-266ENST00000628689 ZNF608Q9ULD9 1512 aaPredicted RBP14.47□□□□□ -0.09
TCF4-266ENST00000628689 MROH2BQ7Z745 1585 aa14.43□□□□□ -0.1
TCF4-266ENST00000628689 RSF1Q96T23 1441 aaPredicted RBP14.41□□□□□ -0.1
TCF4-266ENST00000628689 IFT140Q96RY7 1462 aa14.36□□□□□ -0.11
TCF4-266ENST00000628689 CFTRP13569 1480 aa14.35□□□□□ -0.11
TCF4-266ENST00000628689 CHD1O14646 1710 aa14.35□□□□□ -0.11
TCF4-266ENST00000628689 FBLN2P98095 1184 aa14.33□□□□□ -0.12
TCF4-266ENST00000628689 EIF4G3O43432 1585 aaKnown RBP14.26□□□□□ -0.13
TCF4-266ENST00000628689 AQRO60306 1485 aaKnown RBP eCLIP14.24□□□□□ -0.13
TCF4-266ENST00000628689 PIAS4Q8N2W9 510 aaPredicted RBP14.23□□□□□ -0.13
TCF4-266ENST00000628689 KDM4FA0A1W2PPD8 638 aa14.21□□□□□ -0.13
TCF4-266ENST00000628689 WIZO95785 1651 aa14.2□□□□□ -0.14
TCF4-266ENST00000628689 CLASP1Q7Z460 1538 aa14.16□□□□□ -0.14
TCF4-266ENST00000628689 TOPBP1Q92547 1522 aa14.16□□□□□ -0.14
TCF4-266ENST00000628689 GAPVD1Q14C86 1478 aa14.12□□□□□ -0.15
TCF4-266ENST00000628689 TARBP1Q13395 1621 aaKnown RBP14.09□□□□□ -0.15
TCF4-266ENST00000628689 CHMP7Q8WUX9 453 aaPredicted RBP14.06□□□□□ -0.16
TCF4-266ENST00000628689 PRDM2Q13029 1718 aa14.06□□□□□ -0.16
TCF4-266ENST00000628689 SYNJ1O43426 1573 aa14.05□□□□□ -0.16
TCF4-266ENST00000628689 ABCC8Q09428 1581 aa14.05□□□□□ -0.16
TCF4-266ENST00000628689 KIF13AQ9H1H9 1805 aa14.02□□□□□ -0.16
TCF4-266ENST00000628689 TDRD9Q8NDG6 1382 aaKnown RBP14.02□□□□□ -0.17
TCF4-266ENST00000628689 SNAPC4Q5SXM2 1469 aa14.01□□□□□ -0.17
TCF4-266ENST00000628689 DNMBPQ6XZF7 1577 aa14□□□□□ -0.17
TCF4-266ENST00000628689 POLA1P09884 1462 aaPredicted RBP13.96□□□□□ -0.17
TCF4-266ENST00000628689 RAD54L2Q9Y4B4 1467 aa13.96□□□□□ -0.17
TCF4-266ENST00000628689 FBXO41Q8TF61 875 aa13.96□□□□□ -0.17
TCF4-266ENST00000628689 MSH5O43196 834 aa13.94□□□□□ -0.18
TCF4-266ENST00000628689 ERCC6L2Q5T890 1561 aa13.93□□□□□ -0.18
TCF4-266ENST00000628689 TOP2AP11388 1531 aaKnown RBP13.93□□□□□ -0.18
TCF4-266ENST00000628689 MAGI1Q96QZ7 1491 aaPredicted RBP13.92□□□□□ -0.18
TCF4-266ENST00000628689 FAM69CQ0P6D2 419 aa13.91□□□□□ -0.18
TCF4-266ENST00000628689 SOGA1O94964 1423 aa13.9□□□□□ -0.18
TCF4-266ENST00000628689 SYNJ2O15056 1496 aa13.9□□□□□ -0.18
TCF4-266ENST00000628689 HECW2Q9P2P5 1572 aa13.89□□□□□ -0.19
TCF4-266ENST00000628689 KDM6BO15054 1643 aa13.85□□□□□ -0.19
TCF4-266ENST00000628689 GRIN2BQ13224 1484 aa13.85□□□□□ -0.19
TCF4-266ENST00000628689 CCDC88BA6NC98 1476 aa13.84□□□□□ -0.19
TCF4-266ENST00000628689 ABCC10Q5T3U5 1492 aa13.84□□□□□ -0.19
TCF4-266ENST00000628689 LMTK3Q96Q04 1460 aa13.83□□□□□ -0.2
TCF4-266ENST00000628689 WDR97A6NE52 1622 aa13.82□□□□□ -0.2
TCF4-266ENST00000628689 ADGRL1O94910 1474 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms